Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_4739 |
Symbol | |
ID | 5319107 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009620 |
Strand | - |
Start bp | 1260715 |
End bp | 1262208 |
Gene Length | 1494 bp |
Protein Length | 497 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640776537 |
Product | ABC transporter related |
Protein accession | YP_001313469 |
Protein GI | 150376873 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1129] ABC-type sugar transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.383875 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.00325994 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCTTCTGT CCATGCACGG CATCTGCAAA TCCTTCAACG GCATTCCCGC GCTTCGCTCG GCTTCACTTG AAGTCGGCGA AGCCGAGGTG ATGGCGCTCG TTGGTCAGAA CGGCGCAGGA AAGTCGACGC TTATCAAGAT ACTGACCGGC GCGTACCGGC GCGACGAGGG TTCGATCGCC TTTGCGGGAG AGGACGTTTC CTTCAACATG CCGGCCGAGA GCCAGGCCAG GGGGATTGCA ACGATCTACC AGGAGATCAA CCTCGCCCCG CAACGCTCCG TTGCCGAGAA CATCTATCTT TCGCGCGAAC CCCGGCGCTT CGGTTTGATC GATAGGCGTG CAATGCGCGA AGGCGCGGTC GCCGTCCTGC GGACCTTCAA CCTGGAGATC GACGTCGATC AGCCGGTCGC CCACTTCAGC GCCGCGACCC GGCAGATGGT CGCGATTGCG CGCGCCGTCA CTCAGAAGGC ACGTCTCGTT ATCATGGACG AGCCTACCTC TTCCCTTGAC GAGCGCGAGG TCGCCATCCT TTTCGAAACG ATCAGAACGC TCAAACGCGG CGGCGTATCC GTCGTCTTCA TCGGCCATCG TCTGGACGAG CTCTATCGGA TTTGCGACAG CGTTACGATC ATGCGGGACG GGAAGACGGT GGCGACGGGC GCGATGGCGG AGATGCCGAA GCTCGCACTG GTGCGCCATA TGCTGGGGAA GGAGCTCGCT GCCTTCGAAG CGATTGCCAA GGATGCGGAT GAGGGCGCGC AGCGGCCGGT GCGCCTATCG GTCGAGAATG CCGGGGCCGG CGTTCGGGTG CGGAATGTCA GCCTGACGGT GCGCGAAGGC GAGATCTCGG GGCTTGCCGG TCTGCTCGGC TCCGGCCGAA CCGAAACGGC CAATCTGATT TTCGGCGCCG ACCGGCTTGA GCGCGGGGAA ATTCGCTACA AAGGCCAAGC GCGATCCTAT CGTCAGCCCG CGGAAGCCAT TGCGGACGGC ATCGGTCTCG TTTCCGAGGA TCGGAAGGTC GACGGCATCA TTCCGGATAT GAGCATCCGG GAAAACATGA CGCTCGCGCT TCTGCCGAAG CTCGCCCGTA GCGGCATTGT CGATCGCGCG CGCCAGGATG AGATCGTCGC GAGCTACATC GCCGCGCTTG GGATCAGATG CACTTCGCCC GACCAGCCTA TCAAGGAACT CTCTGGGGGC AACCAGCAGA AGGTGCTGCT CGGACGATGG CTCTGCACCG ATCCGAAACT CCTGATCGTC GACGAACCGA CTCGCGGCAT CGATATCGGC GCCAAAGCCG AAATTCTCCG CCTTTTGCGC AGGTTAGCGG ACGAGGGTTT GGGCGTGCTG ATGATTTCGT CGGAGCTCGA GGAATTGCTC GCGGCAGCCG ACCGGGTAAC CGTCCTCAGC GATGGAACCT CGGTGGCGGT TCTGCCGCGC AGGGAGTTGA GCGAGGCAGC GCTCTTTGCC GCCATGGCGC ATCAGGTGGA GTAG
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Protein sequence | MLLSMHGICK SFNGIPALRS ASLEVGEAEV MALVGQNGAG KSTLIKILTG AYRRDEGSIA FAGEDVSFNM PAESQARGIA TIYQEINLAP QRSVAENIYL SREPRRFGLI DRRAMREGAV AVLRTFNLEI DVDQPVAHFS AATRQMVAIA RAVTQKARLV IMDEPTSSLD EREVAILFET IRTLKRGGVS VVFIGHRLDE LYRICDSVTI MRDGKTVATG AMAEMPKLAL VRHMLGKELA AFEAIAKDAD EGAQRPVRLS VENAGAGVRV RNVSLTVREG EISGLAGLLG SGRTETANLI FGADRLERGE IRYKGQARSY RQPAEAIADG IGLVSEDRKV DGIIPDMSIR ENMTLALLPK LARSGIVDRA RQDEIVASYI AALGIRCTSP DQPIKELSGG NQQKVLLGRW LCTDPKLLIV DEPTRGIDIG AKAEILRLLR RLADEGLGVL MISSELEELL AAADRVTVLS DGTSVAVLPR RELSEAALFA AMAHQVE
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