| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4723 |
|---|
| Symbol | |
|---|
| ID | 5318903 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | + |
|---|
| Start bp | 1245940 |
|---|
| End bp | 1247010 |
|---|
| Gene Length | 1071 bp |
|---|
| Protein Length | 356 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640776521 |
|---|
| Product | dTDP-glucose 4,6-dehydratase |
|---|
| Protein accession | YP_001313453 |
|---|
| Protein GI | 150376857 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1088] dTDP-D-glucose 4,6-dehydratase |
|---|
| TIGRFAM ID | [TIGR01181] dTDP-glucose 4,6-dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.00234117 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGAGTCT TGGTAACGGG TGGCGCGGGT TTCATTGGTT CGGCGGTCTG CCGGCATCTG
ATCCGATGCG GGGCGGAGCG CGTGGTCAAT GTTGACAAAC TGACCTATGC CGGCAGCCTT
GCGTCATTGC GAGCGGTGGA AGGCGACCCG CGCTATGCCT TCTACCGTGC CGACATTCTC
GACGAAAAGG TCCTGCTGCA GATCATGCGC CGGGAGCGCG TGGACGCGAT CATGCATCTT
GCTGCCGAGA GCCATGTCGA CCGTTCTATC GAAGGCCCCG ACCTTTTCAT GGAGACGAAC
GTCCTCGGCA CGGTACGGCT GCTTAACGCG GCACTCGCCT ATTGGTCCGG GCTAGGCCTC
GAAGGGCAGG AGCGTTTCCG CTTCCATCAT GTCTCGACCG ACGAGGTCTT CGGCGACCTC
CCGTTCAACC GGGGCATCTT CTCCGAGGAG AGCCGTTACG CGCCCTCGTC GCCTTACGCG
GCTTCAAAGG CGGCGGCGGA TCATTTTGCG CGCGCCTGGC ATCGCACCTA CGGCTTGCCG
GTGGTCGTCT CGAATTGCTC CAACAATTAC GGCCCATTCC ATTTCCCGGA AAAGCTGATC
CCGCTGACGA TCATCAATGC CATAGAGGAA GAGCCTTTGC CGCTCTATGG CTCCGGAGCG
AATGTCCGCG ATTGGCTCCA TGTGGACGAT CACGCAGCTG CCCTGGACCT GGTCATAAGC
CAGGGCAGAC CAGGGGAAAG CTATAATATC GGCGCCCGTG CCGAGCGCAA TAATCTCTCG
GTCATGGAGA GCATCTGCGA TCTCATAGAC ATGAAATTGC CGCGCAAGGG CGGCGGCAGC
TACAGGGACC TCATCACCCT TGTCCCCGAC CGTCCCGGTC ACGACCGGCG CTATGCGATC
GATCCTTCGA AGGTCGAGCG TGAGCTCGGC TGGAGACCGA AGCGGAGCTT CGAGGCGGGA
TTGAGCGAGA CGGTCGACTG GTTCCTCGCA AACCGCTGGT GGTGGGAGCC GATCCGACGT
GAACGCCATT CGGGATCCCG CATCGGCGGG CTGCATCGGA GCGTGGCGTG A
|
|---|
| Protein sequence | MRVLVTGGAG FIGSAVCRHL IRCGAERVVN VDKLTYAGSL ASLRAVEGDP RYAFYRADIL
DEKVLLQIMR RERVDAIMHL AAESHVDRSI EGPDLFMETN VLGTVRLLNA ALAYWSGLGL
EGQERFRFHH VSTDEVFGDL PFNRGIFSEE SRYAPSSPYA ASKAAADHFA RAWHRTYGLP
VVVSNCSNNY GPFHFPEKLI PLTIINAIEE EPLPLYGSGA NVRDWLHVDD HAAALDLVIS
QGRPGESYNI GARAERNNLS VMESICDLID MKLPRKGGGS YRDLITLVPD RPGHDRRYAI
DPSKVERELG WRPKRSFEAG LSETVDWFLA NRWWWEPIRR ERHSGSRIGG LHRSVA
|
|---|
| |