| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4713 |
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| Symbol | |
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| ID | 5318863 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | - |
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| Start bp | 1232625 |
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| End bp | 1234394 |
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| Gene Length | 1770 bp |
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| Protein Length | 589 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640776511 |
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| Product | type I secretion system ATPase |
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| Protein accession | YP_001313443 |
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| Protein GI | 150376847 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0148717 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTGATA CTGTTCGAAA TCCTTTGATT GGCAAGGGCC ATAGCCGATC GATGGCGCCA
CAAAATGGAA CAATGGCTCC AAAGCTGCTC GTTCTGCGGG CCCGGCGCGT ATTCGTCGTG
ACGCTTCTTT ATGCAGCCCT GCTCAGCGCC TGCATCAACC TCCTGCAACT CACCATGCCG
CTTTATATGA TGCAGGTGCA TGACAGGGTG TTGAACAGCC AGAGCATGGA TACGCTCGTC
ATGCTGACGA TTCTTGCTGT CGGCGCGCTG ATCGTGCTCG GCGTGCTCGA TTTCATTCGC
GCTCTCACCT TTCAGGCCAT GGGTAGCGCC GTGGTCCGCT GGTTGAACCT GCCGGTTCTG
ACCGCCGCCG TGCAGGCGTC GGCCGATCAG GGGCTTGCAC GGGCGACGCA GTCTCTGCGC
GACCTCACGG AGCTGCGCAG CTTCCTCACT TCTTCTGCGG TGAGCGCTCC GCTCGACGCG
GCCTGGTCGC CCATCTTTCT GGGCGTCCTT TTTCTGCTGC ATCCCCTCTT CGGATTGATC
GGTGCGATCT CCGTCGTCGT GCTCGTCTGC TGCGGCCTCC TCAACGACCT CTTGACGCGT
CAGCTCATGA AAGAGGCAAG CCAGGCTAAT ATTGAGGCAG TCTCGAAAAT AGGTGCGACA
TTACGTCACG CCGAAGCCAT CGAAGCGATG GGAATGCTCC CGGCGCTCTC CCAAAAGTGG
CGCGCCGCTC AGCTGCACGC CCTGAGCGTG CTGGAAGCCA GCGGAATCAG AAGCAGGGCG
ATGGCCTCGA TCACCCGATC GCTGCGCTTT GCCATTCAGG TGGCGGCGCT CGGCACCGGC
GCGCTGCTCG TCATGCGGCA GGAGATTTCT CCCGGAGCGA TGATGGCGAC GACCATTCTC
GTGGGGCGCC TTCTGCTGCC GTTCGACTCC GTCATTGAAA ACTGGCGGCA ATGGGTATTG
GCGATCGCAA GCTGGCGCCG CGTCGAAGCG GCACTGAAGG AGGACCTCGC CGTTCGTCAG
ACGATGCCGA CGCCGCGCTC GGAAGGCGAG CTTGTCGTCG ACAAACTGGT CTATGCGGCA
CCCGGCCTTG ATGTCCCGAT CATCAAGGGC ATCAACTTCT CGCTCTCGCC CGGTGAGGTG
CTGGGTATCG TCGGCCCATC CGCCGCGGGT AAATCCACGC TGGCGCGGCT CCTCACCGGC
ATTCTGAAGC CGACTGCCGG CGGTGTTTTT CTGGACGGCA ACAACGTCTA CCTCTGGGAG
CGCAGCTCGT TCGGTCAGGT GGCGGGCTAC CTGCCGCAGT CGGTGTCCCT GCTCGAAGGG
ACGATACGTG AAAACATCGC ACGCATGGCG GAGAGCGACC CTTACAAGGT GCTCGAGGCG
GCGCGGCTTG CCGATGTGCA CGACATGATC GGCAGGCTAC CGCTCGGCTA TGATACGCCG
GTCGGCGATG GCCACCTCAC CCTTTCCGGA GGGCAAAGGC AGCGCATCGC TCTGGCCCGC
TGCCTCTACG GCCGGCCCCG CCTGCTCGTC CTGGACGAGC CCAACGCCAA TCTCGACGCC
ATCGGCGAGC GCGCTCTTAT CCGCGCGATC GAGGAGGCGC GCAGAGACGG CGCCATCGTC
ATCCTCATCG CCCACCGGCC GGCTATCATG CAGGTGGCCG ACAAGCTGCT CGTGCTGGAA
GGCGGCCGCA TCAGCCAGTT CGGCCCACGA ACGGATGTGG TGGCCTCGAT GATCCCGGGC
GAAACGAGAC GCGAAGGTAC TGCTACATGA
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| Protein sequence | MRDTVRNPLI GKGHSRSMAP QNGTMAPKLL VLRARRVFVV TLLYAALLSA CINLLQLTMP
LYMMQVHDRV LNSQSMDTLV MLTILAVGAL IVLGVLDFIR ALTFQAMGSA VVRWLNLPVL
TAAVQASADQ GLARATQSLR DLTELRSFLT SSAVSAPLDA AWSPIFLGVL FLLHPLFGLI
GAISVVVLVC CGLLNDLLTR QLMKEASQAN IEAVSKIGAT LRHAEAIEAM GMLPALSQKW
RAAQLHALSV LEASGIRSRA MASITRSLRF AIQVAALGTG ALLVMRQEIS PGAMMATTIL
VGRLLLPFDS VIENWRQWVL AIASWRRVEA ALKEDLAVRQ TMPTPRSEGE LVVDKLVYAA
PGLDVPIIKG INFSLSPGEV LGIVGPSAAG KSTLARLLTG ILKPTAGGVF LDGNNVYLWE
RSSFGQVAGY LPQSVSLLEG TIRENIARMA ESDPYKVLEA ARLADVHDMI GRLPLGYDTP
VGDGHLTLSG GQRQRIALAR CLYGRPRLLV LDEPNANLDA IGERALIRAI EEARRDGAIV
ILIAHRPAIM QVADKLLVLE GGRISQFGPR TDVVASMIPG ETRREGTAT
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