Gene Smed_4696 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_4696 
Symbol 
ID5318835 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp1213066 
End bp1214220 
Gene Length1155 bp 
Protein Length384 aa 
Translation table11 
GC content60% 
IMG OID640776494 
ProductABC-2 type transporter 
Protein accessionYP_001313426 
Protein GI150376830 
COG category[V] Defense mechanisms 
COG ID[COG0842] ABC-type multidrug transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.508179 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.60669 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGGACC AAGGGAAAAA GGCACAGGCT TACAAAAGCT CTGGACGCGC CCGCCGCTTC 
GCTGCCCTCG TTCGCAAGGA AAGTTATCAG GTCGTGCGCG ATCCGAGCAG TATCCTGATA
GCCTTCGTCT TGCCCTTGGT CCTTCTCTTT CTCTTCGGTT ACGGCGTGTC GCTCGACACG
ACACGAACGC GTGTGGCCCT CGTCGTCGAA GAGACCAGCC CGCTCACCCG CGATCTTGCT
GCGAGCTTTG AGGCCTCGCG CTACTTCTCC GTGGTCGCGG GACGCGACCG CAGGGAATTC
GAAGACGAGC TCGTGCTTGG CCATGTGCGC GGCATAGTGG TGATCCCGGC GGGCTTTGCC
GCCGATCACG CGGCGGCACG CCATCCGTCG GTCCAGGTGA TTGTCGATGG CTCCGATCCG
AACACCGCAA ATTTCGTGCA GAACTATGCA CAAGGCACCG TTGCCAACTG GGAGCGTCAG
CGCATGAGCG AAGGCAGGAG CATGCCCCCG GCAATCTCCA CCGAGCAGCG TTTCTGGTTC
AACCCGCAGC TGACGAGCCG CAACTTCCTG GTTCCGGGGT CGATCGCCAT CGTGATGACT
CTTGTCGGCA CGCTCCTCAC CTCGCTTGTC GTTGCACGTG AATGGGAACG CGGCACGATG
GAGGCAATGA TGGCGACGCC CGTTTCCGCC GCCGAACTGC TCGCCGGCAA GCTCTTGCCC
TACTTTGTCC TCGGTCTTAC ATCGATGACG CTTTGTGTTC TGCTTGCCGT CTTTGTCTTC
GATGTCCCCT TCCGCGGTTC GGTAGCTGCG CTCTACGCTC TTTCGGCGAC CTTCCTCATG
CCGGCTCTCG GACAGGGGCT GCTGATCTCG GCCGCGACGA AGAACCAGTT CCTTGCCTCC
CAGCTTGCGC TGATCTCGGC CTTTCTGCCG GCCTTTCTGC TGTCCGGTTT TCTTTTCGAG
ATCAATTCCA TGCCCACCGT CATTCAATGG ATCACCTATG CAGTGCCGGC AAGCTACCTC
ATACCCAGCC TTCAGACTGT CTTTCTGGCC GGGGACATCT GGCCGATGTT CGCACGCGCC
ATCGCGGTCA TGTTCCTGAT CGGCTGCATG TTCTTCGCGC TTGCCGCGCG CAGCACTAGA
AAGAGGATCG GCTGA
 
Protein sequence
MKDQGKKAQA YKSSGRARRF AALVRKESYQ VVRDPSSILI AFVLPLVLLF LFGYGVSLDT 
TRTRVALVVE ETSPLTRDLA ASFEASRYFS VVAGRDRREF EDELVLGHVR GIVVIPAGFA
ADHAAARHPS VQVIVDGSDP NTANFVQNYA QGTVANWERQ RMSEGRSMPP AISTEQRFWF
NPQLTSRNFL VPGSIAIVMT LVGTLLTSLV VAREWERGTM EAMMATPVSA AELLAGKLLP
YFVLGLTSMT LCVLLAVFVF DVPFRGSVAA LYALSATFLM PALGQGLLIS AATKNQFLAS
QLALISAFLP AFLLSGFLFE INSMPTVIQW ITYAVPASYL IPSLQTVFLA GDIWPMFARA
IAVMFLIGCM FFALAARSTR KRIG