Gene Smed_4695 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_4695 
Symbol 
ID5318834 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp1211952 
End bp1213064 
Gene Length1113 bp 
Protein Length370 aa 
Translation table11 
GC content60% 
IMG OID640776493 
ProductABC-2 type transporter 
Protein accessionYP_001313425 
Protein GI150376829 
COG category[V] Defense mechanisms 
COG ID[COG0842] ABC-type multidrug transport system, permease component 
TIGRFAM ID[TIGR00025] ABC transporter efflux protein, DrrB family 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.595113 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTGGTGGA CACGGCTGAA GGCGCTGATC GTCAAGGAGC TGCTGGCGGT TCTTCGTGAT 
CCGAAGGGGC GCACCATTCT AATCGGCCCT CCGATCATCC AGCTCCTCGT CTTCTCCTAT
GCGGCGACGC TCGAGGTGAC AGATGTCGAC ATCATGGTGC TGAACCGAGA CAATGGCCAG
TGGAGCCAGG AACTCATCCA GCTGGTCGGC GGCTCTCCGA CATTTCGCTC GATCGAGCTT
GCAAGCAGCC CCGCCGAGGT CCGTCTGGCG ATCGATACGC AGCGTGTCAT CGCCGCTGTG
GAGATCGGCC CCACCTTCTC CCGCGACATT GAGGCAGGAA GACCGGCTGA GGTGCAGCTG
ATCCTCGACG GCCGGCGCTC CAATGCGTCG CAGATCGTGT CCGGCTATCT CGGGCGTATC
GTCAGCACGC TCGCAGCCGA AACGCCGGCC GGCAAGCGCG CGCCCTCCGA AACGGTCCAG
GTCGTTGCCC GCAACTGGTT CAACCCCAAC CTGACCTATC AATGGTTCAT GGTGCCGAAC
CTGGTCGCGA GCATCGCTCT CCTGATCGGA CTGATCGTCA CGGCACTATC TGTGGCACGC
GAGCGGGAAC TCGGTACCTT CGACCAGCTC ATCGTCTCGC CGTTGCGCAC CCACGAGATT
TTGCTTGGAA AGCTCATCCC GCCTATGATG ATCGGGCTCT TCCACATCAC CATATACATT
CTTGCAGCGG TTTTCGTGTT CGGCGTGCCG CTGCGCGGTT CGCTTTTCCT GCTCTATGGC
AGCGCCGTCT TCTATCTCGC CGCCGTCGTC GGTCTCGGTC TCTTCATCTC GGCACTGTCC
AAGACCCAGC AGCAGGCGAT CCTCGGGGCC TTTCTCTTCA TGGTGCCCGC CATGCTTCTT
TCGGGATTTG CGACGCCGAT CGAAAACATG CCCTCCTGGC TGCAGCCGGT GACGCTGATC
AATCCGCTGC GTTATTTCCT GGTGATCGTA AAGGGCGTGT TCCTCAAGGA CATCCCGCTT
TACGAAGTCG TCCACCAGAC GCTTCCCCTT TGCCTGATCG CGATCGTCAC TCTGTCATCG
GCGGCGTGGC TCTTTCGCAA GCGTCTCGAA TGA
 
Protein sequence
MWWTRLKALI VKELLAVLRD PKGRTILIGP PIIQLLVFSY AATLEVTDVD IMVLNRDNGQ 
WSQELIQLVG GSPTFRSIEL ASSPAEVRLA IDTQRVIAAV EIGPTFSRDI EAGRPAEVQL
ILDGRRSNAS QIVSGYLGRI VSTLAAETPA GKRAPSETVQ VVARNWFNPN LTYQWFMVPN
LVASIALLIG LIVTALSVAR ERELGTFDQL IVSPLRTHEI LLGKLIPPMM IGLFHITIYI
LAAVFVFGVP LRGSLFLLYG SAVFYLAAVV GLGLFISALS KTQQQAILGA FLFMVPAMLL
SGFATPIENM PSWLQPVTLI NPLRYFLVIV KGVFLKDIPL YEVVHQTLPL CLIAIVTLSS
AAWLFRKRLE