| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4618 |
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| Symbol | |
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| ID | 5318929 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | - |
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| Start bp | 1118904 |
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| End bp | 1120319 |
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| Gene Length | 1416 bp |
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| Protein Length | 471 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640776417 |
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| Product | chitin deacetylase |
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| Protein accession | YP_001313349 |
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| Protein GI | 150376753 |
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| COG category | [G] Carbohydrate transport and metabolism
[S] Function unknown |
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| COG ID | [COG0726] Predicted xylanase/chitin deacetylase
[COG3195] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03164] OHCU decarboxylase
[TIGR03212] putative urate catabolism protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.253154 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGATATC CCCGCGATCT CCTGGGCCAT GGTCCGAACC CGCATATTGC CTGGCCCGAT
GGCGCCCGGA TCGCCGTGCA ATTCGTGATC AATTACGAGG AGGGCGGAGA GAATTGCGTG
CTTCACGGCG ACGCCGCCTC GGAGGCCTTT CTCTCGGAAA TCGTCGGCGC TCAGGCCTGG
CCTGCCCAGC GCCACTGGAA TATGGAATCG ATCTACGAAT ATGGTGCGCG CGCCGGCTTC
TGGCGGCTGC ACCGCCTTTT CACCGAGAGA CAAATAGCGG CCACCGTCTA TGGCGTCGCC
ACTGCCCTCA AGCGCTCGCC CGCCCAGGTG GCGGCCATGC AGGAAGCCGG CTGGGAGATC
GCCTCCCACG GCCTCAAATG GATCGAGCAC AAGGATTTCG ACGCCGAGCG CGAGCGCGCC
GAGATCGCCG AGGCGATCCG CCTCCACACG ATCGTAACCG GAAAGGGGCC GACCGGCTGG
TACACGGGGC GCTGCTCCGT GAACACGCTC GACCTCGTGA CCGAAGCCGG CGGCTTCGAC
TACGTCTCTG ATTCCTACGC CGACGACCTG CCCTACTGGC ATGAGCATGC CGGCCGGCAT
CAGCTCGTCA TTCCATACAC CCTCGATGCC AACGACATGC GCTTTGCGAC CCCGCAAGGT
TTCAACAGCG GCGATCAGTT CTTCAGCTAT CTGAAGGACA GCTTCGACGT TCTCTATGCC
GAGGGTACCG CCGGCGCACC GAAGATGATG AGCATCGGCC TCCATTGCCG TCTAGCCGGC
CGACCCGGCC GCGCGGCCGC ACTGGCGCGC TTCCTCGATT ACGTGAAGGG CCACGAGAAA
GTCTGGGTCG CACGCCGCAT CGACATTGCC CGCTACTGGG CAGAGGCCTA TCCGTTCCGG
CCGAACGAAA ACCGACCGTC GCGGCTCTCG AAGGATGACT TCATTTCTCG ATTCGGTGGA
GTTTTCGAGC ACTCGGACTG GATCGCCAGA CGCGCCTTTG CCGGTGAACT CGCACCGGCT
AACGATACGG CATCGGGACT GCATGCGGCC CTTTGTGCGG TCTTCCGTGA AGCGAGCGAA
GAGGAACGGC TGGCGGTCCT GAACGCCCAC CCGGATCTTG CCGGCAAGCT CGCCCAGGCG
AAGCGGCTGA CAGAGAGCTC GACTTCGGAG CAGGCCTCCG CGGGGCTCGA CGCGCTGACC
GACGAGGAGC GCGAGCGTTT CACTGCGCTC AACGATGCCT ATGTCGAGAA ATTCGGCTTT
CCTTTCATCA TGGCCGTCAA GGGGCGCAGC AAGGACGAGA TCCTCGCGGC CTTCGAGACC
CGCATCGGCA ATGATGGAAA AGCCGAATTC AATACGGCAT GCCTCCAGGT AGAACGGATC
GCGTTGTTGC GGCTCCGCGA AATGCTGCCG GAGTGA
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| Protein sequence | MRYPRDLLGH GPNPHIAWPD GARIAVQFVI NYEEGGENCV LHGDAASEAF LSEIVGAQAW
PAQRHWNMES IYEYGARAGF WRLHRLFTER QIAATVYGVA TALKRSPAQV AAMQEAGWEI
ASHGLKWIEH KDFDAERERA EIAEAIRLHT IVTGKGPTGW YTGRCSVNTL DLVTEAGGFD
YVSDSYADDL PYWHEHAGRH QLVIPYTLDA NDMRFATPQG FNSGDQFFSY LKDSFDVLYA
EGTAGAPKMM SIGLHCRLAG RPGRAAALAR FLDYVKGHEK VWVARRIDIA RYWAEAYPFR
PNENRPSRLS KDDFISRFGG VFEHSDWIAR RAFAGELAPA NDTASGLHAA LCAVFREASE
EERLAVLNAH PDLAGKLAQA KRLTESSTSE QASAGLDALT DEERERFTAL NDAYVEKFGF
PFIMAVKGRS KDEILAAFET RIGNDGKAEF NTACLQVERI ALLRLREMLP E
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