Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_4605 |
Symbol | |
ID | 5318372 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009620 |
Strand | + |
Start bp | 1106104 |
End bp | 1107126 |
Gene Length | 1023 bp |
Protein Length | 340 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640776405 |
Product | extracellular solute-binding protein |
Protein accession | YP_001313337 |
Protein GI | 150376741 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGAACA TTATGCTCGC CTCGAGCGCG CTCCTCTTGA TCGGCACCAC AGCCGCATCC GCTCAGGAAA AAACCCTCAC CATCTCCGTC TATGGCTTTG CCCAGGACGC GTTCAAGGAG CTGGTCTATG ATCCCTTCGA AGCCAAGTGC GGCTGCAATC TCGTGGTCGA AACCGGCAAT AGCGTCGAAC GGCTTGCCAA GATGGAGGCC AACAAGGCTA ATCCGGTCGT CGATATGGCG GTCGTTTCCA TGGCCGATGC GCTTTCCGCT ACCCGGTCCG GCCTGATCGA GAAGATCGAC ACCTCGAAGC TCAGCAATTT CGATAAGCTT TACGACATCG CCAAGGATCC GAACGGCGAC GGGATGAGCG TCGGCTATAC CTTCTACGCC ACTTCGATCG TCTACCGCTC CGACAAGGTG GAAATCACCT CCTGGGCCGA TCTGCTCGGC GACAAGCTCG CCGGTCATGT GGCTCTCCCG AATGTTACGA CCAATCAGGG GCCGCCGACG CTTTACATGA TCGGCGAAGC GCTTGGCCAG AACACGCCGG ACCTCAAGGC CGCAATCGCC GCTGTCGGCG AGAAGAAAGA CGATATCGTT ACCTTCTACG TGAAATCCTC GCAACTCGTT CAGCTGATGC AGCAGGAGGA AATCTGGGCG GCACCGATTG GACGCTTCTC CTGGGAGGGA TTTACCAAGA TGGACCTGCC GATCAAGTGG GCGACCCCGA AGGAAGGCCA GACCGGCGGC ATGAACGTCA TGGTTCTGGC CAAGGGTTCG AAGAACCAGG ATCTGGCGTT GCAGTTCATG GATTTCTGGC TCTCGACTGA GATCCAGACG GCGCTAGCCG AAAAGCTGGT CGACAGCCCG GCCAACAAGG AGGTGAAGGT TTCGCCTGAA ATCGCCGAGA ATCTTACCTA TGGCGAAGAA ACGGTCAGGA ACCTGAAGCT CATCCCATCT GCGGTGGCGC TCGACAATCG GGAAGCGTGG CTCTCCGAGT GGAACGCCAA GGTCGGGCAG TAA
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Protein sequence | MKNIMLASSA LLLIGTTAAS AQEKTLTISV YGFAQDAFKE LVYDPFEAKC GCNLVVETGN SVERLAKMEA NKANPVVDMA VVSMADALSA TRSGLIEKID TSKLSNFDKL YDIAKDPNGD GMSVGYTFYA TSIVYRSDKV EITSWADLLG DKLAGHVALP NVTTNQGPPT LYMIGEALGQ NTPDLKAAIA AVGEKKDDIV TFYVKSSQLV QLMQQEEIWA APIGRFSWEG FTKMDLPIKW ATPKEGQTGG MNVMVLAKGS KNQDLALQFM DFWLSTEIQT ALAEKLVDSP ANKEVKVSPE IAENLTYGEE TVRNLKLIPS AVALDNREAW LSEWNAKVGQ
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