Gene Smed_4605 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_4605 
Symbol 
ID5318372 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp1106104 
End bp1107126 
Gene Length1023 bp 
Protein Length340 aa 
Translation table11 
GC content58% 
IMG OID640776405 
Productextracellular solute-binding protein 
Protein accessionYP_001313337 
Protein GI150376741 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0687] Spermidine/putrescine-binding periplasmic protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAACA TTATGCTCGC CTCGAGCGCG CTCCTCTTGA TCGGCACCAC AGCCGCATCC 
GCTCAGGAAA AAACCCTCAC CATCTCCGTC TATGGCTTTG CCCAGGACGC GTTCAAGGAG
CTGGTCTATG ATCCCTTCGA AGCCAAGTGC GGCTGCAATC TCGTGGTCGA AACCGGCAAT
AGCGTCGAAC GGCTTGCCAA GATGGAGGCC AACAAGGCTA ATCCGGTCGT CGATATGGCG
GTCGTTTCCA TGGCCGATGC GCTTTCCGCT ACCCGGTCCG GCCTGATCGA GAAGATCGAC
ACCTCGAAGC TCAGCAATTT CGATAAGCTT TACGACATCG CCAAGGATCC GAACGGCGAC
GGGATGAGCG TCGGCTATAC CTTCTACGCC ACTTCGATCG TCTACCGCTC CGACAAGGTG
GAAATCACCT CCTGGGCCGA TCTGCTCGGC GACAAGCTCG CCGGTCATGT GGCTCTCCCG
AATGTTACGA CCAATCAGGG GCCGCCGACG CTTTACATGA TCGGCGAAGC GCTTGGCCAG
AACACGCCGG ACCTCAAGGC CGCAATCGCC GCTGTCGGCG AGAAGAAAGA CGATATCGTT
ACCTTCTACG TGAAATCCTC GCAACTCGTT CAGCTGATGC AGCAGGAGGA AATCTGGGCG
GCACCGATTG GACGCTTCTC CTGGGAGGGA TTTACCAAGA TGGACCTGCC GATCAAGTGG
GCGACCCCGA AGGAAGGCCA GACCGGCGGC ATGAACGTCA TGGTTCTGGC CAAGGGTTCG
AAGAACCAGG ATCTGGCGTT GCAGTTCATG GATTTCTGGC TCTCGACTGA GATCCAGACG
GCGCTAGCCG AAAAGCTGGT CGACAGCCCG GCCAACAAGG AGGTGAAGGT TTCGCCTGAA
ATCGCCGAGA ATCTTACCTA TGGCGAAGAA ACGGTCAGGA ACCTGAAGCT CATCCCATCT
GCGGTGGCGC TCGACAATCG GGAAGCGTGG CTCTCCGAGT GGAACGCCAA GGTCGGGCAG
TAA
 
Protein sequence
MKNIMLASSA LLLIGTTAAS AQEKTLTISV YGFAQDAFKE LVYDPFEAKC GCNLVVETGN 
SVERLAKMEA NKANPVVDMA VVSMADALSA TRSGLIEKID TSKLSNFDKL YDIAKDPNGD
GMSVGYTFYA TSIVYRSDKV EITSWADLLG DKLAGHVALP NVTTNQGPPT LYMIGEALGQ
NTPDLKAAIA AVGEKKDDIV TFYVKSSQLV QLMQQEEIWA APIGRFSWEG FTKMDLPIKW
ATPKEGQTGG MNVMVLAKGS KNQDLALQFM DFWLSTEIQT ALAEKLVDSP ANKEVKVSPE
IAENLTYGEE TVRNLKLIPS AVALDNREAW LSEWNAKVGQ