Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_4578 |
Symbol | |
ID | 5318025 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009620 |
Strand | + |
Start bp | 1071872 |
End bp | 1073125 |
Gene Length | 1254 bp |
Protein Length | 417 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640776379 |
Product | polysaccharide export protein |
Protein accession | YP_001313311 |
Protein GI | 150376715 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1596] Periplasmic protein involved in polysaccharide export |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.653885 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.998934 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGGATTT CACCGGCCGT TTTCGGAACG ATTTTGCCCC GCTTAATGAA TGGGGCGTTC CTGCTGCTGA TGGTTCTATG GGTGCTCGCC TGTGCGATGA TAGGAGCAAT GCCGGCTCGA GCCAGTGATT ACCGGCTTAA CACTGGAGAT GTTCTGACCT TCGACTTCCT TGATGATACA GAGTTGCCGG TCACCGCGAC CGTTTCGGGC GAAGGCGAAG CACAATTTCC GCTCATTGGC GCCGTGGGCG TCGTCGGGCT CACGGTGCCG GAGGCGCTGG AGAGGCTTCG CGGCGAGTAC CGCAAGCGCG AAATTCTCGT CGATCCGAAG ATCTCTCTCG ATATATCCAC CTTCCGGCCG ATCTTCGTTC TCGGAGAAGT CAAGACGCCG GGCTCGTTTC CCTTCTACAG CGGGTTGACG GTCGAGCAGG CCGTCGGTCT GGCGGGAGGC ATGCAGGTGG TTGCGGCAAA CGCCTCAGAC AGGATCATCG CACGGGCGCG TTTGCGCGGG GACATCGAGG GTGCTCGCGC CGAGATCGTG CACGAAGCCA TCTATGCCGC GAGGCTCGTG GCGCAATTGA AGTCCTCTGA CAAAATCGAC CTCGCCGACG TCCCCGAGGT CGCGCGCGAC TATGTGACCA GCGTGCCGCT CGATGGTGTC GTCGAGCTCG AAGAAAAGAT CCTGAAAGCC GACCTTGCGG CCAACAAGTC GCAGGCGCAG ATCCTGACCG AAGGTATCGC TCAGGCCGAG GGTGGAATAG ATATTCTGAA CCAACTGGTT CTGCAGCAAA AGGACGTGGT GCAGAACAGC AAGGAGGATG TGGACCGTAC CGCTACCTTG CGCAAGCGCG GCCTGAATAC AGAGAGCGAC CTGTCGCGCG CCGAGAACAA TGCCTCGGCC GAACAGGCGC AGCTTCTCGA GACTTTCGCC ACCCTTGCAC GGTCGCGTCA GGAAATGAGT GAATTGAAGC TGCAACTGGC GAAGCTTGCG GCCGACCGGG AGAAGGATAT CCTGACCCAA CTCCAGGCGC GTGAGATCGC GATCAAAAAG CTGATTTCCC AACAGCACTC CGCCGAAGAA CAAATTCTCC TCATGACCGC TGTGGCCGAA GACGAGTCGA AGAAGAAGCA GATTTCCTAT ACCTACGAGA TCCGTCGAAA CCCGGTTGGC GGCACGCCGG CCAGCATAAA GGCGTCGCCC TTGACTGAAC TCGTTCCTGG CGACGTGCTG ACGGTGGCTA TTGCCGGAAT GTAA
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Protein sequence | MGISPAVFGT ILPRLMNGAF LLLMVLWVLA CAMIGAMPAR ASDYRLNTGD VLTFDFLDDT ELPVTATVSG EGEAQFPLIG AVGVVGLTVP EALERLRGEY RKREILVDPK ISLDISTFRP IFVLGEVKTP GSFPFYSGLT VEQAVGLAGG MQVVAANASD RIIARARLRG DIEGARAEIV HEAIYAARLV AQLKSSDKID LADVPEVARD YVTSVPLDGV VELEEKILKA DLAANKSQAQ ILTEGIAQAE GGIDILNQLV LQQKDVVQNS KEDVDRTATL RKRGLNTESD LSRAENNASA EQAQLLETFA TLARSRQEMS ELKLQLAKLA ADREKDILTQ LQAREIAIKK LISQQHSAEE QILLMTAVAE DESKKKQISY TYEIRRNPVG GTPASIKASP LTELVPGDVL TVAIAGM
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