Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_4442 |
Symbol | |
ID | 5317964 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009620 |
Strand | - |
Start bp | 929421 |
End bp | 929999 |
Gene Length | 579 bp |
Protein Length | 192 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640776244 |
Product | TetR family transcriptional regulator |
Protein accession | YP_001313177 |
Protein GI | 150376581 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.75286 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGACAAA AGAAATCCGA GAACCAGCCT GAAGCAAGTT CCGCGCGTCG TCGTTTGCTC GACGCGGCGA CACGGCTTTT CTACGAGGGC GGAATCCATG CTGTCGGTAT CGACCGCATC ATCGCCGAAG CCGGTGTCGC CAAGGCGACC TTCTACAATC ACTTTCCCTC GAAGGATGAC CTCGTCGTCG CCTATCTCGA AGAGATAGAT CGGCTCGGCC GGGCGGCAGT GGCCGCGCTT CCGAAGCAAC CTCCTCGGAA AGCGATTTCT GCGATCATGG GACGTATCAG CGAGGCCGTG ACCGCGGGAG GCTGGCGGGG GTGTCCGTTC CTCAATGCGG CGGCGGAGTA TCCCGATCCG GCCAGCCCCG TGCGGCAGGC GATCGATGCG CGTCGCGCTT GGTATCACGA CAGCCTCGAG AACCTTCTGG CAGAGGACGG CGATCCAGCT CCTTCCGTCA CCGCTTCCCT CCTCGTCGCG CTCTCGGACG GTCTCCTGGA AAGTGCCTAT CTGGATGGCG CTGAAAGCGT CCCCGCCCTT GTCCGCGAGG CAGTCGCTCG ACTGCTGGAC CGCCGATGA
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Protein sequence | MRQKKSENQP EASSARRRLL DAATRLFYEG GIHAVGIDRI IAEAGVAKAT FYNHFPSKDD LVVAYLEEID RLGRAAVAAL PKQPPRKAIS AIMGRISEAV TAGGWRGCPF LNAAAEYPDP ASPVRQAIDA RRAWYHDSLE NLLAEDGDPA PSVTASLLVA LSDGLLESAY LDGAESVPAL VREAVARLLD RR
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