Gene Smed_4442 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_4442 
Symbol 
ID5317964 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp929421 
End bp929999 
Gene Length579 bp 
Protein Length192 aa 
Translation table11 
GC content63% 
IMG OID640776244 
ProductTetR family transcriptional regulator 
Protein accessionYP_001313177 
Protein GI150376581 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.75286 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGACAAA AGAAATCCGA GAACCAGCCT GAAGCAAGTT CCGCGCGTCG TCGTTTGCTC 
GACGCGGCGA CACGGCTTTT CTACGAGGGC GGAATCCATG CTGTCGGTAT CGACCGCATC
ATCGCCGAAG CCGGTGTCGC CAAGGCGACC TTCTACAATC ACTTTCCCTC GAAGGATGAC
CTCGTCGTCG CCTATCTCGA AGAGATAGAT CGGCTCGGCC GGGCGGCAGT GGCCGCGCTT
CCGAAGCAAC CTCCTCGGAA AGCGATTTCT GCGATCATGG GACGTATCAG CGAGGCCGTG
ACCGCGGGAG GCTGGCGGGG GTGTCCGTTC CTCAATGCGG CGGCGGAGTA TCCCGATCCG
GCCAGCCCCG TGCGGCAGGC GATCGATGCG CGTCGCGCTT GGTATCACGA CAGCCTCGAG
AACCTTCTGG CAGAGGACGG CGATCCAGCT CCTTCCGTCA CCGCTTCCCT CCTCGTCGCG
CTCTCGGACG GTCTCCTGGA AAGTGCCTAT CTGGATGGCG CTGAAAGCGT CCCCGCCCTT
GTCCGCGAGG CAGTCGCTCG ACTGCTGGAC CGCCGATGA
 
Protein sequence
MRQKKSENQP EASSARRRLL DAATRLFYEG GIHAVGIDRI IAEAGVAKAT FYNHFPSKDD 
LVVAYLEEID RLGRAAVAAL PKQPPRKAIS AIMGRISEAV TAGGWRGCPF LNAAAEYPDP
ASPVRQAIDA RRAWYHDSLE NLLAEDGDPA PSVTASLLVA LSDGLLESAY LDGAESVPAL
VREAVARLLD RR