| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4409 |
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| Symbol | |
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| ID | 5318122 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | + |
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| Start bp | 902901 |
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| End bp | 904988 |
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| Gene Length | 2088 bp |
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| Protein Length | 695 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640776213 |
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| Product | glycogen debranching enzyme GlgX |
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| Protein accession | YP_001313146 |
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| Protein GI | 150376550 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
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| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.374964 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCTGG CTTTTACCGA ACTCGATTTC ATAAAGCCCG AACTCGGTGC AGATTACACC
GGGCAGGGGA CGCATTTCGC CGTCTTCTCG GCGCATGCGG AGAAGATCGA GCTTTGTCTG
TTTTCCGAAG ACGGGCGCGA GGAAACGGCG CGCATGCCGC TGCCGAAGCG CGAGGGCGAC
GTCTGGTCCG GTTACATAGA GGGTATCGGT CCCGGCGCCC TCTACGGTTA CCGCGCACAC
GGGCCGTATG ATCCACATAA GGGCCATCGC TTCAATCCCA ACAAGCTGTT GCTCGACCCC
TATGCCAAAC AGGTTGCGGG GGAACTCATC TGGGACGACG CGCTTTTCGG ATACACGATC
GGTAGCCCTG ACGGCGATCT TTCATTCGAC GAACGCGACA GCGCTCCCTT TATGGTGAAG
GGCGTCGTTC AGGACCCGGC CTTCGATTGG GCAGGCGAGG AAGCGATCCG CCGCCCCTGG
ACGGAAACGG TCATCTATGA AGCGCATGTC CGCGGCATGA CCATGACGCA CCCCGCCGTA
CCCGACGAGC TGCGCGGCAC ATTCCTCGGC ATGGCAAGCG ATCCGATCAT CGAGCACCTG
GTGAAGCTCG GCGTTTCCGC CATCGAATTG ATGCCGGTCC AGTATTTCCT CGACGACCGT
TATCTGATCG AGCGCAATCT CAGAAACTAC TGGGGCTATC AGACGCTCGG CTTCTTCGCT
CCCCACAAGC GTTATCTGAG GGGCGACCGC ATCACGGAAT TCAAGACGAT GGTGAAGCGG
TTTCATGCCG TTGGCATCGA AGTCCTGATG GATGTCGTCT ACAACCATAC GGCCGAGGGC
TCGGAACGAG GCCCGACATT GAGCTTCCGT GGGTTGGACA ATTTCAGCTA CTACCGCCAG
TCGCCCGACA AACCGCGTCA TACCTACGAC ACGACCGGAA CCGGCAACAC CCTCAACGTT
GCCCATCCGC TGGTGCTGCG GATGGTCCTC GACAGCCTGC GTTACTGGGT GGGAGTGATG
CATATCGACG GCTTTCGCTT CGACCTTGCA AGCACGCTCG GCCGCGAATA CATGGAGTTC
GATCGCGAGG GCGGTTTCTT CGACGCGATC CGACAGGACC CGATCCTTGC GGGCGTGAAG
CTCATCGCCG AACCGTGGGA CGTGGGCCAG GGCGGTTACC AGCTTGGTGG TTTCCCGCCG
CCGTTTCGCG AGTGGAACGA CCAGTTCCGC GACGACGTCC GGCGGTTCTG GAGGGGAGAC
GCCGGCATGG TTCCGGTGCT TGCGGAGCGC CTCGTCGGTT CGCCGGTACA GTTCAGGCAT
TCGGATCGTG CCGCAACGTC GTCCATCAAT CTGGTGAGCG CCCATGATGG CTTCACACTG
ATGGACACGG TCTCCTATGG TGAAAAGCAC AATGAGGCGA ACGGTGAGGA GAACCGTGAC
GGCCATTCGG ACAATCATTC CGACAATATG GGCGCTGAAG GTCCAACTGA TAACGCAGAG
GTTAACGAGG CACGCAGGCG GCGGCGCGCC GCCATGGTCG CTACGCTGAT GGTCAGCCAG
GGCGTGCCGA TGGTGCTCGG CGGCGACGAG TTGGGCAACA GTCAGAGAGG CAACAACAAT
GCCTATTGCC AGGATAACGA GATCGGATGG CTCGACTGGC CCGGCGCGGA CGAGGGCTTT
CTGGACTTCT GCCGCAAGCT CATCGCCTTT CGAAAACAGT CTCCTGTCCT GCGCCAGGAG
CGGTTTCTCG ACGGGGAGCC TGACGAGAAT GGACGCGTCG AGATCGCCTG GTACAAGGCC
GACGGCACCC CCATGGACGA AGATGCCTGG CACACTGGCG AACTCCGCCT GATCTGCGCC
TATATCTGCA GGACCGGCCA GGATGAAGCG TCGCCGGTCG GCGAGATCGT CGTCGTGCTC
AATGCTGGCG AGGGGTGCGA GATAGTCCTT CCGCACGCGA ATGGAACGAA ACACTGGCTG
CGGGTGCTCG ACACGGCAGC CGAAGAGCCG TTCGACATGC GCGCGAGTGC CGACAGGGAG
AGCATTCCGG CACAAAGCCT CGTCGCCTAC GTTCCGCAGG AGGGCTGA
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| Protein sequence | MNLAFTELDF IKPELGADYT GQGTHFAVFS AHAEKIELCL FSEDGREETA RMPLPKREGD
VWSGYIEGIG PGALYGYRAH GPYDPHKGHR FNPNKLLLDP YAKQVAGELI WDDALFGYTI
GSPDGDLSFD ERDSAPFMVK GVVQDPAFDW AGEEAIRRPW TETVIYEAHV RGMTMTHPAV
PDELRGTFLG MASDPIIEHL VKLGVSAIEL MPVQYFLDDR YLIERNLRNY WGYQTLGFFA
PHKRYLRGDR ITEFKTMVKR FHAVGIEVLM DVVYNHTAEG SERGPTLSFR GLDNFSYYRQ
SPDKPRHTYD TTGTGNTLNV AHPLVLRMVL DSLRYWVGVM HIDGFRFDLA STLGREYMEF
DREGGFFDAI RQDPILAGVK LIAEPWDVGQ GGYQLGGFPP PFREWNDQFR DDVRRFWRGD
AGMVPVLAER LVGSPVQFRH SDRAATSSIN LVSAHDGFTL MDTVSYGEKH NEANGEENRD
GHSDNHSDNM GAEGPTDNAE VNEARRRRRA AMVATLMVSQ GVPMVLGGDE LGNSQRGNNN
AYCQDNEIGW LDWPGADEGF LDFCRKLIAF RKQSPVLRQE RFLDGEPDEN GRVEIAWYKA
DGTPMDEDAW HTGELRLICA YICRTGQDEA SPVGEIVVVL NAGEGCEIVL PHANGTKHWL
RVLDTAAEEP FDMRASADRE SIPAQSLVAY VPQEG
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