| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4408 |
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| Symbol | |
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| ID | 5318121 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | - |
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| Start bp | 900951 |
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| End bp | 902756 |
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| Gene Length | 1806 bp |
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| Protein Length | 601 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640776212 |
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| Product | malto-oligosyltrehalose trehalohydrolase |
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| Protein accession | YP_001313145 |
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| Protein GI | 150376549 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
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| TIGRFAM ID | [TIGR02402] malto-oligosyltrehalose trehalohydrolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.354382 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGAGAAA GCTCAACGCC TCCGTGTTTC AGAAAAACTT GGGGGCCCAA TTTCGTCGGC
GAAGACACTT GCCGGTTTCG GCTGTGGGCT CCCGACGAGC GGGGTGTCGA TCTCGTCCTC
GACGGGACCC CGCACGAGAT GCGGCAGAGC GATGGCGGCT GGTTCGAAAT CACGGTCGAG
ACGAAGCCGG GAGACCGTTA TTGCTTCCGA TTGGCCGACG GAACCGAGGT TGCGGATCCG
GCTTCGTCGG CACAGGAGCG GGGTGCGGAA GGTGCGTCGC TCGTCGTCGA CCAGGCGGCC
TATGAATGGC GGGCCGCCTC CTGGCGTGGC AGGCCCTGGG AGGAGGCGGT CATCTCGGAG
CTGCATATCG GCTGCTTCAC GCCGGAGGGC ACATTCCGCG CCGCGATCAA CCGCCTGCCG
CATCTGGCAT CGGCCGGAAT TACCGCGATT GAAATCATGC CCGTCGCACA GTTCCCCGGC
GCGCGGGGCT GGGGCTACGA TGGTGTGCTG CATTATGCCC CGCATAATGC CTATGGGACG
CCGGATGACC TGAAGGGGCT CGTGGATGCA GCGCATTCGC TCGGCCTCAT GGTCCTGCTC
GACGTGGTTT ACAACCATTT TGGGCCCGAG CAGAATTACC TTTCCCTGTA CGCAAGCCGC
TTCTTCAACA AGGATCGCCC CACACCCTGG GGTGCGTCCA TTGCCTTCGA GGAAGAAGCA
GTCCGGCGAT ATTTTATCGA GAATGCGCTT TACTGGCTCG GCGATTTCCG TTTCGACGGT
TTGCGCCTCG ATGCGACTGA ACAGATTCGT GACACGAGCA ATCCGCATTT CCTCGTCGCG
CTGGAGCACG AAGTGCGCAA ATGCTTCGCC GACCGCCAAA TCCACCTGGT GGTGGAGGAC
GCCAATCGCC GCAGAAGCCT GCTCGAGCGT GACGCCAACG GCACGCCCAT GCTCTTCGAC
GCGGCATGGA ACGACGACCT TCACAACGCG CTCCATGTCG TAGCGACCGG CGAAACCAGG
GGCCACTATC GCCCCTTCGC GGAGGCCCCG TGGAGCAAGA TCCGCAGCGC GCTGGCCGAA
GGTTTCGCCG TGCCCGCAAA GGAGGACAAC TTCTCCGCTG AAGGAAGCCG CGCCCGGGTG
CCGCCGCAGG GCCGTGTGAA TTTCCTGCAG AACCACGACC AAATCGGCAA CCGCGCTTTC
GGCGAGCGCC TTGCCTCGCT GGTTCGAGAG GATAGCCTGC GGGTGTTGAC GGCCATGCAC
ATGCTCGCGC CGCAAATTCC CCTTCTGTTC ATGGGTGAGG AATACGGCGA GACACAGCCC
TTCTACTTCT TCTCCGACTA TCAGGGAGAA ATCGCCGACG CGATCCGGCT GGGACGCCGG
GACGAAGCCG AGAATTTCGG CGGGCTTCCA AATGGCAAGA CCGTGGAGGA TCTGCCCGAC
CCGCTGGATC CGGAGGTTTT TTCCGGCTCG AAGCTGCGCT GGAGCCGCGC GGCAAGTCCG
GCCGGCGAGC GGCGTCTTGC CTATATGCGC GACCTTGCTT CGATCCGGCA GAGGCATATC
GTGCCGATGA TGGCCGGTAC CGCAATGCCG GAACACCGGG CATTCGAGAC AGAGGACGGT
GTCATCGCCG TCGACTGGCA GTTCGGGGAG TCCTGCCTGG AAATGCGCGT CAATCTTTCA
CAGGAGACGC ACGCCATGCC CCCGTTCCGG GGTCAGCCGA TCTTCGCCAG CGAAGCGGCC
GGCGAGAGGA CGCCCGACGT CACCGAACTG GCCGGCCTCG GCATCGTGGT CGCCATTGCA
CGATGA
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| Protein sequence | MRESSTPPCF RKTWGPNFVG EDTCRFRLWA PDERGVDLVL DGTPHEMRQS DGGWFEITVE
TKPGDRYCFR LADGTEVADP ASSAQERGAE GASLVVDQAA YEWRAASWRG RPWEEAVISE
LHIGCFTPEG TFRAAINRLP HLASAGITAI EIMPVAQFPG ARGWGYDGVL HYAPHNAYGT
PDDLKGLVDA AHSLGLMVLL DVVYNHFGPE QNYLSLYASR FFNKDRPTPW GASIAFEEEA
VRRYFIENAL YWLGDFRFDG LRLDATEQIR DTSNPHFLVA LEHEVRKCFA DRQIHLVVED
ANRRRSLLER DANGTPMLFD AAWNDDLHNA LHVVATGETR GHYRPFAEAP WSKIRSALAE
GFAVPAKEDN FSAEGSRARV PPQGRVNFLQ NHDQIGNRAF GERLASLVRE DSLRVLTAMH
MLAPQIPLLF MGEEYGETQP FYFFSDYQGE IADAIRLGRR DEAENFGGLP NGKTVEDLPD
PLDPEVFSGS KLRWSRAASP AGERRLAYMR DLASIRQRHI VPMMAGTAMP EHRAFETEDG
VIAVDWQFGE SCLEMRVNLS QETHAMPPFR GQPIFASEAA GERTPDVTEL AGLGIVVAIA
R
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