| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4407 |
|---|
| Symbol | |
|---|
| ID | 5318120 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | - |
|---|
| Start bp | 900219 |
|---|
| End bp | 900860 |
|---|
| Gene Length | 642 bp |
|---|
| Protein Length | 213 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640776211 |
|---|
| Product | phage SPO1 DNA polymerase-related protein |
|---|
| Protein accession | YP_001313144 |
|---|
| Protein GI | 150376548 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1573] Uracil-DNA glycosylase |
|---|
| TIGRFAM ID | [TIGR00758] uracil-DNA glycosylase, family 4 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.380012 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAAGAG AATCCGCCAA ACTTGGCCCA GCGCTCGCGG GCGAACATGC AGAGGCACCG
ACGATTGCCT CCTTACGGCG GGAGGCCGAG GGCTGCGAGC GGTGTGACCT CTACAAGAAT
GCCACGCAGC TGGTCTTCGG CGAAGGCCCG ACCGACGCCC GCGTTGTGCT TGTCGGGGAA
CAGCCCGGCG ACCGGGAGGA TCTCGCGGGG CGCCCGTTCG TCGGGCCCGC CGGGCGGCTT
CTGGACGAGT GCATGCACGA AGCCGGCATC GATAGGTCGG AATGCTATCT GACCAATGCC
GTCAAACACT TCAAGTTCGA ACCGCGCGGC AAGCGCCGGC TGCATTCGCG GCCAAATGCC
GGCGAGGTCC AGGCCTGTGC CTGGTGGCTC GGCGCCGAAA TCGATGAGCT CCGCCCCGAA
ATCGTCGTTG CGCTCGGGGC CACGGCGCTG ATGTCGCTGC TCGGTCGAGG CGTCGGCGTC
ACAAAAAACC GAGGACAGTT TGTGCCAGCA CCCGGCGGGT TCTCCGTGCT CGTCACGATT
CATCCCTCCT ATCTGCTGAG AATCCGCGGC AGAGGCGACC CCGAGGCGGA ACGCGCCCGT
TTCGTCGACG ATCTCGCCAA AGTAGCGGTT CGAATTGGTT GA
|
|---|
| Protein sequence | MPRESAKLGP ALAGEHAEAP TIASLRREAE GCERCDLYKN ATQLVFGEGP TDARVVLVGE
QPGDREDLAG RPFVGPAGRL LDECMHEAGI DRSECYLTNA VKHFKFEPRG KRRLHSRPNA
GEVQACAWWL GAEIDELRPE IVVALGATAL MSLLGRGVGV TKNRGQFVPA PGGFSVLVTI
HPSYLLRIRG RGDPEAERAR FVDDLAKVAV RIG
|
|---|
| |