Gene Smed_4405 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_4405 
Symbol 
ID5318118 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp898827 
End bp899342 
Gene Length516 bp 
Protein Length171 aa 
Translation table11 
GC content65% 
IMG OID640776209 
Producthypothetical protein 
Protein accessionYP_001313142 
Protein GI150376546 
COG category[S] Function unknown 
COG ID[COG4297] Uncharacterized protein containing double-stranded beta helix domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.55111 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGGTCG AAGAGTTCAT ATTCGCCGAA AGCGGCGGCG TACCGAACAA TCCGCGCTTG 
CCCGTGCTGG TCTACCGCCA GGCGATCGAC GTTACCGAAA ATGCAGCCAC ACGGATCGAA
CAACGCTTCC GGGCCAATGG TTGGCTCGGT CTCTGGCGCA ACGGGGTCTT TGCCCATCAC
CACTACCATT GCGGTGCTCA CGAGGTTCTC GGGATTGCTG AAGGCCGGGC GCGCCTCCTC
ATCGGCGGGC CGGGTGGCCG GGAAGTCGAG GTCGCAGCCG GCGACGTCAT TCTCCTTCCC
GCGGGAACCG GCCACCGCCG CGACGAGGCG AGCGCCGACT TCCTCGTTAT CGGCGGTTAT
CCGCCGGAGC AACACGCCGA TATCAAAAGC GGCGCCGCGA CGGCGGATGA CCGTATCGCG
ATCGACGCGG TGCCGTTGCC TCGCTTCGAC CCGGTTCTCG GCGCAGAGGG ACCAGCCGTC
ATCGTCTGGC ACTCCGCAAT GCATGCACGG AGCTGA
 
Protein sequence
MKVEEFIFAE SGGVPNNPRL PVLVYRQAID VTENAATRIE QRFRANGWLG LWRNGVFAHH 
HYHCGAHEVL GIAEGRARLL IGGPGGREVE VAAGDVILLP AGTGHRRDEA SADFLVIGGY
PPEQHADIKS GAATADDRIA IDAVPLPRFD PVLGAEGPAV IVWHSAMHAR S