| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4376 |
|---|
| Symbol | |
|---|
| ID | 5317985 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | - |
|---|
| Start bp | 876529 |
|---|
| End bp | 877050 |
|---|
| Gene Length | 522 bp |
|---|
| Protein Length | 173 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640776180 |
|---|
| Product | ECF subfamily RNA polymerase sigma-24 factor |
|---|
| Protein accession | YP_001313113 |
|---|
| Protein GI | 150376517 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGCTA TCGGCGGTCA CGCATCGCAA CAATCACCGC TGCTTGAGGA GCAAGTCGTC
GATCTGATCC CCGCTCTGCG GGCGTTCGCT CGTACGTTTA CGACAGCGTC CTTCGAGGCC
GATGACCTCG TGCAGGAGAC GTTGCTCCGG GCGCTGAGAA GCATCGAGCA GTTTCAGCCC
GGGACGAGCC TCAAGTCCTG GCTGTTCACG ATCATGCGCA ATGCCTTTCG CACGCAATAC
AAAATCCGCA CGCGCGAAAG TCCTGGGAGC ACCAATTGCG CTGAATTGCC GATACCGACG
GCGCCCTCGC AGGAGTGGTC GGTCCTCAAT GGCGAGTTGC GCAACGCGCT TGGCGCCCTT
TCACCGGAGC ACCGGGAAGT TCTCGTGCTC GTTGCCGGAT TCGGCCTGAG CTATAAGGAA
GCCGCCGACA TATGCGACTG CGCGATCGGC ACGATCAAAA GCCGGCTCAG CAGGGCCCGT
GATGAACTGA CTGCGCAAAT GCACGGAAAT CCGCTGAACT GA
|
|---|
| Protein sequence | MPAIGGHASQ QSPLLEEQVV DLIPALRAFA RTFTTASFEA DDLVQETLLR ALRSIEQFQP
GTSLKSWLFT IMRNAFRTQY KIRTRESPGS TNCAELPIPT APSQEWSVLN GELRNALGAL
SPEHREVLVL VAGFGLSYKE AADICDCAIG TIKSRLSRAR DELTAQMHGN PLN
|
|---|
| |