Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_4361 |
Symbol | |
ID | 5318384 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009620 |
Strand | - |
Start bp | 860684 |
End bp | 863881 |
Gene Length | 3198 bp |
Protein Length | 1065 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640776166 |
Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
Protein accession | YP_001313099 |
Protein GI | 150376503 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0447912 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTTCCG AAATCTTCAT CGATCGCCCG CGCTTTGCCG CGGTCATTTC CATCGTGCTC ACCCTCGCCG GACTGATTGC TCTGACGAGA CTGCCTGTCG CGCAGTTTCC GGATATCGTT CCGCCGCAGG TCAGCATAAC GGCAAGCTAT CCCGGCGCCG GCGCAGACGT GGTCGAGGCC ACAGTCGCTC AGCCTATCGA GAGCAAGGTG GTCGGCGTCG ACGACATGCT CTACATGAAA TCGACGAGCG GCGCCGACGG GACCTACTCG TTGACGGTCA CCTTCGCCGT CGGCACCGAT CCGGACATCG CCACGGTCAA TGTGCAGAAC CGCGTGGCAC TTGCCGAGCC GGTGCTTCCG GCCGAAGTCA AGCAGAGCGG CGTCAGCGTC CAGAAGAGAT CCTCCTCGCT GATGCAGGTG ATCGCCATTC ACGGCGAGAA TGACGAATTC GACAATCTGT TTCTCTCGAA CTACGCGACG ATCAACGTGC TCGACACGAT CAAGCGCGTA CCGGGCGTCG GCGACGCAAC GCTTTTCGGC GCTCAGGACT ATTCGATGCG GATCGTCCTC GACATCGACC GGCTGACTAA TCTGGGATTG ACGCCGACCG ACGTCATCAA CGCCTTGAAG GCCCAGAACG TCCAGGCTGC GATCGGCCGC ATCGGCGCCC AACCGATGAC GGATGACCCG CTGTTCCAGC TGAACATCCA GACGCAGGGC CGGCTGACCG ATCCAGCCCA GTTCGGAGAC GTCGTGCTGA GGGCCGGAGC GGATGGTTCC TTCGTCCGCA TTCGCGACGT CGCACACGTC GAGCTGGGGT CGGTGAGCTC AGACTCCACT GCCCGCATCA ACGGCAAACC GGTGGCGATG ATCGGCACCT ATCAGGCACC GGGCGCCAAT GCGCTCGCCG CCACGGAGGG CGTGCAACAG GCTCTGGAGC GCCTTTCCGC AGCATTCCCG GAGGGCCTCA CCTATAGCGT CTCCTACGAC ACCTCGGACT TCGTCCAGGC CAGCGTCGAG AATGTCGAGC ACACACTCCT CGAGGCTTTT GCCCTCGTCA TCATCGTCGT CTTCCTCTTT CTCGGCAATT GGCGCGCCAC ATTGATCCCG CTCATCGCTG TTCCGGTGGC TCTCGTCGGT ACCTTTGCGG TGATCCTGGC GATGGGCTTC TCGCTGAATA CGGTCTCGCT TCTCGCTCTG GTGCTCGCGA TCGGCATCGT CGTCGATGAC GCGATCGTGG TCGTGGAAAA CGTCGAACGT GTGATGGAAG AGAACCCCGG CATGAGTGCG GCGGAGGCCT CGCGTCTTGC GATGGGCGAA ATCACCGGCG CGATCGTTGC CATCACGCTC GTCCTGCTTT CGGTCTTCGT GCCGGTCGCG TTCATTCCGG GCCTGAGCGG CCAGCTTTTC CAGCAATTCG CCGTCGCCGT GTCGGTCTCG ATGGTCATCT CCGCCATCAA CGCATTGACC CTGAGTCCGG CGCTGTGCGC AATTCTCCTG AAACCGCATC ACGGACCGAA ACGCGGCGTT CTCGGCTGGA TATCGCGCGG CATCGACCGC ACTCGTAACG GCTACGCCCA TCTTGCCGGA GGCATTGCCC GCAGAGCCAT CCTCGGCCTG GTTCTGCTGG CGGTCGCGAT CGGCGCCAGC GGCTGGCTGT TCCGGATCGT TCCGACCGGC TTTCTTCCGA GCGAGGACCA GGGCGCTTTC TTCGCGGAAA TCCGCCTCCC TGAGGGGGCA TCCTTCAACA GGACGGACGC CGTCGTGCGC CAGGTCGAAA GCCTGCTCGG CAGCATCGAA GGGGTGGCGA ACGTTACCAC CGTCACCGGC TATAGCTTCC TCGACGGCAT TGCCAAGTCG AGCAGCGCTT TCGCGATCGT GACGATGAAG CCATTCGCGG AACGAGAGAG CGAAACCGCC TCGGTCAACG CGGCGATCGC CACCGTCATG GCGCAAGGCG CGGCAATCCG AAACGCCCAG GTCTTCGCCT TCAACCTGCC ACCCATCATC GGTCTCGGCA CCGGCTCCGG CTTCGAATAC CAATTGCTGG ACCTGCAGGG CCGATCACCG GCCGAGCTTG CGGCGACGGC CGGCGGATTG ATGGTGGCCG CCAACCAGAA CCCGCAACTC GGGCCGACCT TCAGCACCTA TTCGGCGAGC TCGCCGCAGC TTTATCTCGA TCTCGACCGC GATCGCCTGC AGGCGCTCGG GGTCTCCGTA AGTGACCTCT TCGCTACGCT ACAGGGGACG CTCGGATCCT ATTACGTCAA CGACTTCAAC CTCTTCGGCC GGAGCTGGAA GGTCACGATG CAGGCGGCCG AGACCGATCG CGATGCGGTC GAAGACATCT CCCGGCTGCA TGTGCGCAAC GCTGCAGGCG ACATGGTGCC GGTAGCCTCG GTCGCCCGGG TAAACTATAT CGTCGGACCG CAGTCGATCG TCCGGTACAA CAATTACCGC TCGATCACCC TCAACGGTCA ACCGGCACCC GGCGTGTCCT CCGGGCAGGC TCTTGCGGCA ATGGAACAAA TCTCCGCCGC CACACTGCCG CCGGGCTACA GTTTCGAGTG GACGGGGACG GCGCTGCAGG AACTGGAGGC CGCCGGCCAG ACAACTGTGA TCCTGGCGCT CGCCGTCTTC TTCGCCTATC TGTTCCTTGT GGCACTTTAC GAAAGCTGGA CGATCCCAAT TCCGGTTCTG CTTTCGGTTT CCGTCGGTGT GGCCGGCGCT CTTGTCGCAG TGCTCCTCGC CGGGCTCTCC TTCGATATCT ATGCACAGAT CGGTCTCGTC GTGTTGATCG CTCTCGCCTC CAAGAACGCG ATCCTGATAG TCGAATTCGC AAAGTTCCAA AGAGAGAAAG GCGTGCCTAT CGTCGATGCC GCAGTCGAAG GCGCGCGCAC CCGTTTTCGT GCCGTGATGA TGACCAGCTT CGCCTTCATC GTCGGACTGG TGCCGCTCGT CACGGCCGAA GGCGCCGGCA TGCTCAGCCG CCGTGCGGTC GGCACGGGCG TCGCCGGCGG CATGCTCGCC GCTTCACTCC TCGGGATTTT CATCATTCCG GCGCTCTATG TCGTGTTCCA ATGGCTGCGG GAAAGGGGGC ATAAGCTTGC CGGCCTGTCG TCACACGCGG CGGTCGAGGC TCCACGCAAG GGCGAACTGG AGGAATCCAT CGAGCGCGAC CGGAACGTTG CAGACTGA
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Protein sequence | MISEIFIDRP RFAAVISIVL TLAGLIALTR LPVAQFPDIV PPQVSITASY PGAGADVVEA TVAQPIESKV VGVDDMLYMK STSGADGTYS LTVTFAVGTD PDIATVNVQN RVALAEPVLP AEVKQSGVSV QKRSSSLMQV IAIHGENDEF DNLFLSNYAT INVLDTIKRV PGVGDATLFG AQDYSMRIVL DIDRLTNLGL TPTDVINALK AQNVQAAIGR IGAQPMTDDP LFQLNIQTQG RLTDPAQFGD VVLRAGADGS FVRIRDVAHV ELGSVSSDST ARINGKPVAM IGTYQAPGAN ALAATEGVQQ ALERLSAAFP EGLTYSVSYD TSDFVQASVE NVEHTLLEAF ALVIIVVFLF LGNWRATLIP LIAVPVALVG TFAVILAMGF SLNTVSLLAL VLAIGIVVDD AIVVVENVER VMEENPGMSA AEASRLAMGE ITGAIVAITL VLLSVFVPVA FIPGLSGQLF QQFAVAVSVS MVISAINALT LSPALCAILL KPHHGPKRGV LGWISRGIDR TRNGYAHLAG GIARRAILGL VLLAVAIGAS GWLFRIVPTG FLPSEDQGAF FAEIRLPEGA SFNRTDAVVR QVESLLGSIE GVANVTTVTG YSFLDGIAKS SSAFAIVTMK PFAERESETA SVNAAIATVM AQGAAIRNAQ VFAFNLPPII GLGTGSGFEY QLLDLQGRSP AELAATAGGL MVAANQNPQL GPTFSTYSAS SPQLYLDLDR DRLQALGVSV SDLFATLQGT LGSYYVNDFN LFGRSWKVTM QAAETDRDAV EDISRLHVRN AAGDMVPVAS VARVNYIVGP QSIVRYNNYR SITLNGQPAP GVSSGQALAA MEQISAATLP PGYSFEWTGT ALQELEAAGQ TTVILALAVF FAYLFLVALY ESWTIPIPVL LSVSVGVAGA LVAVLLAGLS FDIYAQIGLV VLIALASKNA ILIVEFAKFQ REKGVPIVDA AVEGARTRFR AVMMTSFAFI VGLVPLVTAE GAGMLSRRAV GTGVAGGMLA ASLLGIFIIP ALYVVFQWLR ERGHKLAGLS SHAAVEAPRK GELEESIERD RNVAD
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