Gene Smed_4361 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_4361 
Symbol 
ID5318384 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp860684 
End bp863881 
Gene Length3198 bp 
Protein Length1065 aa 
Translation table11 
GC content63% 
IMG OID640776166 
Producthydrophobe/amphiphile efflux-1 (HAE1) family protein 
Protein accessionYP_001313099 
Protein GI150376503 
COG category[V] Defense mechanisms 
COG ID[COG0841] Cation/multidrug efflux pump 
TIGRFAM ID[TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0447912 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTTCCG AAATCTTCAT CGATCGCCCG CGCTTTGCCG CGGTCATTTC CATCGTGCTC 
ACCCTCGCCG GACTGATTGC TCTGACGAGA CTGCCTGTCG CGCAGTTTCC GGATATCGTT
CCGCCGCAGG TCAGCATAAC GGCAAGCTAT CCCGGCGCCG GCGCAGACGT GGTCGAGGCC
ACAGTCGCTC AGCCTATCGA GAGCAAGGTG GTCGGCGTCG ACGACATGCT CTACATGAAA
TCGACGAGCG GCGCCGACGG GACCTACTCG TTGACGGTCA CCTTCGCCGT CGGCACCGAT
CCGGACATCG CCACGGTCAA TGTGCAGAAC CGCGTGGCAC TTGCCGAGCC GGTGCTTCCG
GCCGAAGTCA AGCAGAGCGG CGTCAGCGTC CAGAAGAGAT CCTCCTCGCT GATGCAGGTG
ATCGCCATTC ACGGCGAGAA TGACGAATTC GACAATCTGT TTCTCTCGAA CTACGCGACG
ATCAACGTGC TCGACACGAT CAAGCGCGTA CCGGGCGTCG GCGACGCAAC GCTTTTCGGC
GCTCAGGACT ATTCGATGCG GATCGTCCTC GACATCGACC GGCTGACTAA TCTGGGATTG
ACGCCGACCG ACGTCATCAA CGCCTTGAAG GCCCAGAACG TCCAGGCTGC GATCGGCCGC
ATCGGCGCCC AACCGATGAC GGATGACCCG CTGTTCCAGC TGAACATCCA GACGCAGGGC
CGGCTGACCG ATCCAGCCCA GTTCGGAGAC GTCGTGCTGA GGGCCGGAGC GGATGGTTCC
TTCGTCCGCA TTCGCGACGT CGCACACGTC GAGCTGGGGT CGGTGAGCTC AGACTCCACT
GCCCGCATCA ACGGCAAACC GGTGGCGATG ATCGGCACCT ATCAGGCACC GGGCGCCAAT
GCGCTCGCCG CCACGGAGGG CGTGCAACAG GCTCTGGAGC GCCTTTCCGC AGCATTCCCG
GAGGGCCTCA CCTATAGCGT CTCCTACGAC ACCTCGGACT TCGTCCAGGC CAGCGTCGAG
AATGTCGAGC ACACACTCCT CGAGGCTTTT GCCCTCGTCA TCATCGTCGT CTTCCTCTTT
CTCGGCAATT GGCGCGCCAC ATTGATCCCG CTCATCGCTG TTCCGGTGGC TCTCGTCGGT
ACCTTTGCGG TGATCCTGGC GATGGGCTTC TCGCTGAATA CGGTCTCGCT TCTCGCTCTG
GTGCTCGCGA TCGGCATCGT CGTCGATGAC GCGATCGTGG TCGTGGAAAA CGTCGAACGT
GTGATGGAAG AGAACCCCGG CATGAGTGCG GCGGAGGCCT CGCGTCTTGC GATGGGCGAA
ATCACCGGCG CGATCGTTGC CATCACGCTC GTCCTGCTTT CGGTCTTCGT GCCGGTCGCG
TTCATTCCGG GCCTGAGCGG CCAGCTTTTC CAGCAATTCG CCGTCGCCGT GTCGGTCTCG
ATGGTCATCT CCGCCATCAA CGCATTGACC CTGAGTCCGG CGCTGTGCGC AATTCTCCTG
AAACCGCATC ACGGACCGAA ACGCGGCGTT CTCGGCTGGA TATCGCGCGG CATCGACCGC
ACTCGTAACG GCTACGCCCA TCTTGCCGGA GGCATTGCCC GCAGAGCCAT CCTCGGCCTG
GTTCTGCTGG CGGTCGCGAT CGGCGCCAGC GGCTGGCTGT TCCGGATCGT TCCGACCGGC
TTTCTTCCGA GCGAGGACCA GGGCGCTTTC TTCGCGGAAA TCCGCCTCCC TGAGGGGGCA
TCCTTCAACA GGACGGACGC CGTCGTGCGC CAGGTCGAAA GCCTGCTCGG CAGCATCGAA
GGGGTGGCGA ACGTTACCAC CGTCACCGGC TATAGCTTCC TCGACGGCAT TGCCAAGTCG
AGCAGCGCTT TCGCGATCGT GACGATGAAG CCATTCGCGG AACGAGAGAG CGAAACCGCC
TCGGTCAACG CGGCGATCGC CACCGTCATG GCGCAAGGCG CGGCAATCCG AAACGCCCAG
GTCTTCGCCT TCAACCTGCC ACCCATCATC GGTCTCGGCA CCGGCTCCGG CTTCGAATAC
CAATTGCTGG ACCTGCAGGG CCGATCACCG GCCGAGCTTG CGGCGACGGC CGGCGGATTG
ATGGTGGCCG CCAACCAGAA CCCGCAACTC GGGCCGACCT TCAGCACCTA TTCGGCGAGC
TCGCCGCAGC TTTATCTCGA TCTCGACCGC GATCGCCTGC AGGCGCTCGG GGTCTCCGTA
AGTGACCTCT TCGCTACGCT ACAGGGGACG CTCGGATCCT ATTACGTCAA CGACTTCAAC
CTCTTCGGCC GGAGCTGGAA GGTCACGATG CAGGCGGCCG AGACCGATCG CGATGCGGTC
GAAGACATCT CCCGGCTGCA TGTGCGCAAC GCTGCAGGCG ACATGGTGCC GGTAGCCTCG
GTCGCCCGGG TAAACTATAT CGTCGGACCG CAGTCGATCG TCCGGTACAA CAATTACCGC
TCGATCACCC TCAACGGTCA ACCGGCACCC GGCGTGTCCT CCGGGCAGGC TCTTGCGGCA
ATGGAACAAA TCTCCGCCGC CACACTGCCG CCGGGCTACA GTTTCGAGTG GACGGGGACG
GCGCTGCAGG AACTGGAGGC CGCCGGCCAG ACAACTGTGA TCCTGGCGCT CGCCGTCTTC
TTCGCCTATC TGTTCCTTGT GGCACTTTAC GAAAGCTGGA CGATCCCAAT TCCGGTTCTG
CTTTCGGTTT CCGTCGGTGT GGCCGGCGCT CTTGTCGCAG TGCTCCTCGC CGGGCTCTCC
TTCGATATCT ATGCACAGAT CGGTCTCGTC GTGTTGATCG CTCTCGCCTC CAAGAACGCG
ATCCTGATAG TCGAATTCGC AAAGTTCCAA AGAGAGAAAG GCGTGCCTAT CGTCGATGCC
GCAGTCGAAG GCGCGCGCAC CCGTTTTCGT GCCGTGATGA TGACCAGCTT CGCCTTCATC
GTCGGACTGG TGCCGCTCGT CACGGCCGAA GGCGCCGGCA TGCTCAGCCG CCGTGCGGTC
GGCACGGGCG TCGCCGGCGG CATGCTCGCC GCTTCACTCC TCGGGATTTT CATCATTCCG
GCGCTCTATG TCGTGTTCCA ATGGCTGCGG GAAAGGGGGC ATAAGCTTGC CGGCCTGTCG
TCACACGCGG CGGTCGAGGC TCCACGCAAG GGCGAACTGG AGGAATCCAT CGAGCGCGAC
CGGAACGTTG CAGACTGA
 
Protein sequence
MISEIFIDRP RFAAVISIVL TLAGLIALTR LPVAQFPDIV PPQVSITASY PGAGADVVEA 
TVAQPIESKV VGVDDMLYMK STSGADGTYS LTVTFAVGTD PDIATVNVQN RVALAEPVLP
AEVKQSGVSV QKRSSSLMQV IAIHGENDEF DNLFLSNYAT INVLDTIKRV PGVGDATLFG
AQDYSMRIVL DIDRLTNLGL TPTDVINALK AQNVQAAIGR IGAQPMTDDP LFQLNIQTQG
RLTDPAQFGD VVLRAGADGS FVRIRDVAHV ELGSVSSDST ARINGKPVAM IGTYQAPGAN
ALAATEGVQQ ALERLSAAFP EGLTYSVSYD TSDFVQASVE NVEHTLLEAF ALVIIVVFLF
LGNWRATLIP LIAVPVALVG TFAVILAMGF SLNTVSLLAL VLAIGIVVDD AIVVVENVER
VMEENPGMSA AEASRLAMGE ITGAIVAITL VLLSVFVPVA FIPGLSGQLF QQFAVAVSVS
MVISAINALT LSPALCAILL KPHHGPKRGV LGWISRGIDR TRNGYAHLAG GIARRAILGL
VLLAVAIGAS GWLFRIVPTG FLPSEDQGAF FAEIRLPEGA SFNRTDAVVR QVESLLGSIE
GVANVTTVTG YSFLDGIAKS SSAFAIVTMK PFAERESETA SVNAAIATVM AQGAAIRNAQ
VFAFNLPPII GLGTGSGFEY QLLDLQGRSP AELAATAGGL MVAANQNPQL GPTFSTYSAS
SPQLYLDLDR DRLQALGVSV SDLFATLQGT LGSYYVNDFN LFGRSWKVTM QAAETDRDAV
EDISRLHVRN AAGDMVPVAS VARVNYIVGP QSIVRYNNYR SITLNGQPAP GVSSGQALAA
MEQISAATLP PGYSFEWTGT ALQELEAAGQ TTVILALAVF FAYLFLVALY ESWTIPIPVL
LSVSVGVAGA LVAVLLAGLS FDIYAQIGLV VLIALASKNA ILIVEFAKFQ REKGVPIVDA
AVEGARTRFR AVMMTSFAFI VGLVPLVTAE GAGMLSRRAV GTGVAGGMLA ASLLGIFIIP
ALYVVFQWLR ERGHKLAGLS SHAAVEAPRK GELEESIERD RNVAD