| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4319 |
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| Symbol | |
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| ID | 5319168 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | - |
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| Start bp | 816886 |
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| End bp | 818166 |
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| Gene Length | 1281 bp |
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| Protein Length | 426 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640776124 |
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| Product | type III effector Hrp-dependent outers |
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| Protein accession | YP_001313057 |
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| Protein GI | 150376461 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3395] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.369903 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.109983 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAATCC TGCTCGGCTC GATTGCCGAT GACTATACGG GCGCTTCAGA CCTCGCCAAC
ACGCTGACGA AGAATGGGCT TCGCACCGTC CAGACGGTCG GCATTCCGGA TCCCTCGCTC
GCACTTCCGG ATGTCGATGC CGTGGTGGTT TCTCTCAAGA TCCGTTCGGT CGCAGCCGAA
GAGGCCGTGG CCGCCGCGCT CAAGGCCGAA AGCTGGCTGC GTGGGCGGGG CGCCATCCAT
GTGCTCTACA AAATCTGCTC CACCTTCGAT TCGACGGATC TCGGCAATAT CGGACCGGTG
ACCGAAGCGC TTCTGAGCGT CTCGTCCGGC GACATCGCCC TTGTTACGCC GGCCTTTCCG
GAAACGGGCC GGACCGTCTA TCTCGGCCAT CTTTTCGTCA ACGGCCAACC GCTCGACGAA
AGCCCGCTGA AAGACCATCC CCTCAACCCG ATGGGTGATG CCAATCTGGT ACGCGTGCTC
GCGCGCCAGT CGCGCAACAG GAGTGGCCTC GTCGATCTGC CGGCGGTGGC GGCCGGAACC
GATGCGGTGA AGGCGCGGCT CGGCGCCTTG CGCGGCGAAG GCGTCGCTGC AGCGATCGCG
GACGCGGTCT TCGAACGCGA TCTCGAAACG CTTGGTCGCG TCGCGCTGGA AATGCCCGTC
TCCACCGGAG CATCGGGCCT CGGTCTCGGT CTTGCACGCG CGCTTGTAAG CTCCGGCCGG
GCATCGGCGA ATACAGGGGC GAACGACGCG ATCCGTCTCC CGGTCGGCGG CCTCGCGGCG
GTCCTTGCCG GCAGTTGTTC GGTGGCAACG CTGAAGCAGC TCGAAGCGGC CGAACGCCAT
ATGCCAGTGC TGAGGCTCGA TACGGAAAAA CTCCTGGCCG GACAGGACGA CATTTCCGCC
GCCATCGCCT GGGCCGGAGA GCGGATTGCC GATGGCCCCG TTGCCATCGC CGCCAGCGCC
GCGCCGGACG TCGTTTCGCG TCTGCAGGCC CGCTACGGGC GCGAAGCATC CGGGCACGCG
ATCGAAACGG CCACCGCAGC GATCGCCGGC GAGCTCGTCG AGCGCGGCGT GAGACGCCTC
GTCGTCGCAG GCGGAGAAAC CTCCGGCGCC ACCGTCGACA GGCTCGCCAT TCCAGCCTTC
CTGATCGGCC CGGAGATCGC CCCCGGTGTT CCTCTGTTGA GGACGATCGG CTCTGCCGGA
AACGACATGT TGCTGGCGCT GAAATCCGGC AATTTCGGCG GCGAGGATTT CTTCGCCACG
GCGCTCTCGA TGATGCGGTA A
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| Protein sequence | MTILLGSIAD DYTGASDLAN TLTKNGLRTV QTVGIPDPSL ALPDVDAVVV SLKIRSVAAE
EAVAAALKAE SWLRGRGAIH VLYKICSTFD STDLGNIGPV TEALLSVSSG DIALVTPAFP
ETGRTVYLGH LFVNGQPLDE SPLKDHPLNP MGDANLVRVL ARQSRNRSGL VDLPAVAAGT
DAVKARLGAL RGEGVAAAIA DAVFERDLET LGRVALEMPV STGASGLGLG LARALVSSGR
ASANTGANDA IRLPVGGLAA VLAGSCSVAT LKQLEAAERH MPVLRLDTEK LLAGQDDISA
AIAWAGERIA DGPVAIAASA APDVVSRLQA RYGREASGHA IETATAAIAG ELVERGVRRL
VVAGGETSGA TVDRLAIPAF LIGPEIAPGV PLLRTIGSAG NDMLLALKSG NFGGEDFFAT
ALSMMR
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