| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4303 |
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| Symbol | |
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| ID | 5319307 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | - |
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| Start bp | 796510 |
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| End bp | 798963 |
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| Gene Length | 2454 bp |
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| Protein Length | 817 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640776108 |
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| Product | DNA ligase D |
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| Protein accession | YP_001313041 |
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| Protein GI | 150376445 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.400493 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGACAT CGAAGCTCGA TGCCTACCGC GGGAAGCGGG ATTTTTCAAA AACGCCGGAG
CCGGCCGGGA ATCTCTCCGG CGGCGGTAAC CGCTTTGTCG TGCACAAGCA CCACGCGGCC
GCTGACCATT ACGACCTGAG GCTGGAGGTC GGCGATGTCC TGAAAAGCTG GGCGGTGCCG
AAGGGACCTT CGCTCAATCC GGCCGACAAG CGGCTGGCGG TAGCGACGGA GGATCATCCC
CTCGATTATA TCGACTTCGA GGGCGTGATC CCGGAGGGCG AATATGGCGG CGGCCCGATG
ATCGTCTGGG ACAAGGGCGT CTGGGCGCCG ATGGGCGATG TCGAACAGGA CCTGCGCAAG
GGCGCCTTCA AGTTCCGTCT GGCGGGGGAG AAACTCAAAG GCGGCTGGAT GCTGACCCGC
CTGAAGCCTC GCCCCGGAGA GGAGGATCAG CGCAACTGGC TCCTGTTCAA GGAGCGCGAC
CTCGCCGCCG ACACGTCGAT CGATATCCTT GCCGCCCGTC CGGAAAGCGT CAAGTCCGGC
CGGCGGATCG AGGAACTCGT GGAAAAGCCC AAGGCAGCGC CCAAACCGGT CAAGCTCAAT
CCCCGCGCGC TTCCCGGTGC GGTCGAGGGC GCAGCGCCCC ATCGCGTGGA GCCCCAGCTT
GCCACCCCGA CGGTCCTTCC TCCCGAAGCC GAGAAAGGTA AGAAGCCCGA GGTATGGCTG
CACGAAATCA AGTTCGACGG CTATCGCACC ATGGCCCACC TCGCTGACGG AAGGGTCCGC
CTCATCACCC GCGGCGGGCT GGACTGGACC AAGCGTTACG GAGACCTGCC GGAGGCCTTC
CGGCGGCTGC CGTGCCGCGA TGCCATCATA GACGGCGAGA TCGTGGTTCT GGACGAGACG
GGGGTCAGCC GGTTCGCCCT TTTGCAGGAT GCGCTTTCCA CCGGCGCCGG CAACAGCCTC
GTATTCTACG CCTTCGACCT CCTGCACCTG AACGGCTGGA ATCTTTTCGA CGCCCCGCTC
GAAAAGCGTA AAACGCTGCT GAAGCAGCTG CTTGCGGGGC AGGTCACCGA TCGCTCGGCC
ATCCAGTTCA GCGATCACGT GGTCGGCGAA GGGCGCGCGC TTTATGACCA GGCCTCGGAG
ATGGGTCTGG AAGGGATCGT CTCGAAACGC CTCTCGGCGC CTTACCGGAG CGGCCGGTCG
AAGACCTGGA CGAAGACGAA GGCACTGAAG GCGGAGGATT TCGTGATCGT CGGCTACACC
GTGTCGCAGG CGGCCGAGGG ACTTGCGGCA CTTGCCCTTG GAGAGTGGTC CGACGGAGAG
CTGGCATATC GCGGCAAGGT CGGAACCGGC TTCGACGCAG CGATGCTTGA GAAATTGCTT
GAAAGGCTCG AACCTCTGCG CTCCGGTGCC GCAAGGCTCG AAGGAGCGCC CAAGGAAATC
ATCTGGGTAC GGCCGCTGCT CAGGGCTCAG ATCCATTACG GCAACCGGAC GACTGACAAT
GTGCTGCGCC ATGCCGTCTT CAAGGGCCTC CGCGACGTCG AGTTGACGAC GCCGGTATCC
CCGTCGAGAA AGCGCCTGAT CTCGGACGCG GATCTCGCAA GCATATCGAT CACCAATCCG
ACACGACGCC TTTTCGGCAA GTCCGGCCCG ACCAAGCTCG ACCTTGCCGT GTATTACGCG
ATGATCGGCG ATTTCATGCT GCCGCACATC CTCGGCCGTC CGGTTTCGCT GGTGCGCTGT
CCCAGCGGCC GGACTCAGGA TTGTTTCTTC CAGCGCCACC CCTTCACCGG CATGCCGCCT
TCGGTCGCGA CGTTCGAGGC AATCAACTCC GAGGGCGAGT CCAGGACCTA TCTGTCTGTC
GAGGACGCGA AGGGATATCT GGCATTGGCG CAATTCGGAG TCGTCGAATT CCACAACTGG
GGAGCCACGC GCAGGCTCCT TGGCAAGCCC GACCGGGTTG TCTTCGACCT CGACCCCGGC
GAAGGCATCG CTTGGCGGGA AGTTGTCGAG GCCGCAATCC ACATCAAGTC CGAGCTCGAG
GCGCTCGACC TCGTGCCCTT CGTCAAGACA TCGGGCGGCA AGGGAGTGCA CGTCGTGGTT
CCGGTCAAGC CGAAGCTCGA CTGGAAGAAA TTCCATCCGG CGACGAGTGC GCTCGCCGGC
CGCCTCGCGG CGACGGCTCC GGATAGCTTC ACCACCACCA TGGGCAAGAA CAACCGGGTG
AAGCGCATCT TCATCGATTA TCACCGCAAC GCCCGCAGCC ATACCTGGGC GGCTCCCTAT
TCACTGCGGG CCCGCACCAA TTTGCCCGCG TCGACGCCGC TCAGCTGGGC CGATCTTGAG
GCTATCGACG CCCCGCAGGA TTTGAACTAT TCTTCGCTGC CGGGCCTTCT GGCCTCGTCC
GGCGATCCCT GGGCCGACAT CGATGCGTTC GCGAGGGATC TGCCGTTATT GTAG
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| Protein sequence | MATSKLDAYR GKRDFSKTPE PAGNLSGGGN RFVVHKHHAA ADHYDLRLEV GDVLKSWAVP
KGPSLNPADK RLAVATEDHP LDYIDFEGVI PEGEYGGGPM IVWDKGVWAP MGDVEQDLRK
GAFKFRLAGE KLKGGWMLTR LKPRPGEEDQ RNWLLFKERD LAADTSIDIL AARPESVKSG
RRIEELVEKP KAAPKPVKLN PRALPGAVEG AAPHRVEPQL ATPTVLPPEA EKGKKPEVWL
HEIKFDGYRT MAHLADGRVR LITRGGLDWT KRYGDLPEAF RRLPCRDAII DGEIVVLDET
GVSRFALLQD ALSTGAGNSL VFYAFDLLHL NGWNLFDAPL EKRKTLLKQL LAGQVTDRSA
IQFSDHVVGE GRALYDQASE MGLEGIVSKR LSAPYRSGRS KTWTKTKALK AEDFVIVGYT
VSQAAEGLAA LALGEWSDGE LAYRGKVGTG FDAAMLEKLL ERLEPLRSGA ARLEGAPKEI
IWVRPLLRAQ IHYGNRTTDN VLRHAVFKGL RDVELTTPVS PSRKRLISDA DLASISITNP
TRRLFGKSGP TKLDLAVYYA MIGDFMLPHI LGRPVSLVRC PSGRTQDCFF QRHPFTGMPP
SVATFEAINS EGESRTYLSV EDAKGYLALA QFGVVEFHNW GATRRLLGKP DRVVFDLDPG
EGIAWREVVE AAIHIKSELE ALDLVPFVKT SGGKGVHVVV PVKPKLDWKK FHPATSALAG
RLAATAPDSF TTTMGKNNRV KRIFIDYHRN ARSHTWAAPY SLRARTNLPA STPLSWADLE
AIDAPQDLNY SSLPGLLASS GDPWADIDAF ARDLPLL
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