| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4301 |
|---|
| Symbol | |
|---|
| ID | 5319305 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | - |
|---|
| Start bp | 794438 |
|---|
| End bp | 795523 |
|---|
| Gene Length | 1086 bp |
|---|
| Protein Length | 361 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640776106 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_001313039 |
|---|
| Protein GI | 150376443 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3063] Tfp pilus assembly protein PilF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.406426 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.198903 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGTTG CCGGCAGGAC ATTCGGTATC ATAGGCGCGC TCGCCGCTTT TCCGCGGCGG
CTCGCGGCGC GTGAGGTCGA GCGCCAGGGC GGGCACCTCA GGCGCGGCGT CGCGCGCCAG
ACGAACTACG TGGTCTTCGG GCGGGGGCTG CTCTCCAGAG CAACAGAGGC GGAGATCGAA
AAGCGCTTCG ACGGCGAGAG CGGAGCGCAT GGGCGCGTTC TCAGCGAAAA CGGCTTCCTG
CGCCTGCTGG GGCTGGCGCG CGCGGCGGAA ACATCGGCGC TGGCACGACA GTCGCTCATC
GACCAGTCCG GAATTTCCCC TCGCCACCTC GATCTTCTAT CGCTGTTCGA CGCCTTCGAG
CATGATGGCG AACCATATTC TTTCCGTGAC CTGATCCTCG CCCGGAAATA TGCGGGGCTG
ACGGCCAGCG GCGCCGGATG GAGCGCGATC GCGCGATCGG TTCACCGCTC CGGAAATGTC
GCATCCCTCA CCGCACTCTC CCTGCAACAT GAAGGAAACG ATACGATCTA TGCGCGACGC
GCCGAGGGCT TGAGCGAGCT CGACGGCCAG ATGCTGCTCG ATGTCGGCTC TCCGGACGAG
GAGGCGCTCG AAGACCTTTT CGCGCTGGCC GAAGCGGCCG AGGAAGCGGG AGACTACGAT
GAGGCGGCCG CATTCTACCA GCGCTACCTC GCCATCGACC GCACCGACTC CGTCGCTTCC
TTCAATCGTG CCAACTGCCT CAGGGCCGCC GGACAGGAGG CGGAAGCGGC GCACGACTAT
GCCCGCGCCA TCAAGCTCGA TCCTTCCTTC GTCGAGGCAT GGTTCAACCT TGCGGGGCTG
ATGGAGGAAC GCGGCCGCAG GGACACGGCC AGACGGCATC TCACGAAAGC GATCGAGCTC
GACGGCGGTT ATGCCGATGC GGTCTTCAAC CTGGCGAAGC TGGAGTTCGA TGCGGGCAAT
CTCACCGAGG CGCGCCGCTG GTGGATGCGC TACCTCGAAC TCGATCAGGA TTCCGAATGG
GCGCGCAAGG CCGAACGCGG CGTGCAATTC GTGAACCTTC AACTCCTCTC CAGAACGGCA
GGGTAA
|
|---|
| Protein sequence | MAVAGRTFGI IGALAAFPRR LAAREVERQG GHLRRGVARQ TNYVVFGRGL LSRATEAEIE
KRFDGESGAH GRVLSENGFL RLLGLARAAE TSALARQSLI DQSGISPRHL DLLSLFDAFE
HDGEPYSFRD LILARKYAGL TASGAGWSAI ARSVHRSGNV ASLTALSLQH EGNDTIYARR
AEGLSELDGQ MLLDVGSPDE EALEDLFALA EAAEEAGDYD EAAAFYQRYL AIDRTDSVAS
FNRANCLRAA GQEAEAAHDY ARAIKLDPSF VEAWFNLAGL MEERGRRDTA RRHLTKAIEL
DGGYADAVFN LAKLEFDAGN LTEARRWWMR YLELDQDSEW ARKAERGVQF VNLQLLSRTA
G
|
|---|
| |