Gene Smed_4283 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_4283 
Symbol 
ID5319119 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp774688 
End bp775785 
Gene Length1098 bp 
Protein Length365 aa 
Translation table11 
GC content66% 
IMG OID640776088 
Productsecretion protein HlyD family protein 
Protein accessionYP_001313021 
Protein GI150376425 
COG category[V] Defense mechanisms 
COG ID[COG1566] Multidrug resistance efflux pump 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.638187 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACTCGC TCGAGGACAA GATCGCCATC ATCACCGACG CAAGTTCAGC GAATGGTGTC 
GCCACGTCGC GATCCGTCAG GAGAAAGATG ATTGGCCTGG TGCTGTGCCT CGGGTCGGTC
GTCGTCGTGG CAACCGGATG GTCGTGGACC TGCGAGAACG GTGCGATGTC GACCGACAAT
GCCTATGTCC GCGGCGACGT CACCGCGCTT GCCCCAAAGG TCGCGGGCTA TGTCACGGCG
GTGGGGGTCG AGGACAACCA AGCAGTCCGG GCAGGCGACA TCCTGTTCCG CATCGACGAT
CGCGACTACC GCGCAAGGCT GGCGCAGGCC GTGGCCAATG TCGAAGCCGC GCAGGCGCGG
CTGACCAATG TCGATGCGGA GAAGGAGCTT CAGCATGCCC TGATCCGCCA GGCCGAAGCG
CAGCGACGTT CGGCCATTGC GGAGCTGAAT CTCGCGAGCA AGGCATATGA TCGCCGCCGC
GAACTCATCC GGAGCAACAC CGTAAGCCAG GCGCATGTCG ACGAAAGCGA TGCTGCCAGG
TCGAGAGCCG AGGCGAACGT GTTGGCGGCT TCCGCCACGG TAGAGGCTCA GCAGCAGCGC
ATTGCCGTGC TCGCGGCGCA GCGGGAAGCC GCCGTCGCTG CGGTGGCGCA GGCACAGGCC
GCGCGCGCCC TCGCCGAAAT CGATTTAGAG AGCACCGTGG TGCGCGCGCC CGTCGGCGGC
GTCATAGGCA ACCGCCAGGT CCGCGTCGGC CGGCTTGTTG CGTCGGGCGC TCCGCTGCTG
GATGTCGTTC CCCTCGACAA TGTCTGGATC GTCGCGAACT TCAAGGAAAC TCAGCTCGAA
CACCTCCGGC CCGGTCAGCG CGCCAGCATC ACCATCGACG GTTATCCGAA CGCGGTGCTC
GAAGGCGTGG TCGACAGTTT TGCGCCAGGC AGCGGCACTG CCTTCAGCCT GCTGCCCGCA
GACAACGCAA CGGGCAACTT CGTTCGCGTC GTCCAGCGCG TGCCCGTGAA GATCCGGTTT
GCCGGCAGTC CGCTGCCCGG CCGCCTCGTG CCCGGCCTGT CGGCGCGGGT CGAGATCGAT
CTGGAGAGCG GTTCATGA
 
Protein sequence
MDSLEDKIAI ITDASSANGV ATSRSVRRKM IGLVLCLGSV VVVATGWSWT CENGAMSTDN 
AYVRGDVTAL APKVAGYVTA VGVEDNQAVR AGDILFRIDD RDYRARLAQA VANVEAAQAR
LTNVDAEKEL QHALIRQAEA QRRSAIAELN LASKAYDRRR ELIRSNTVSQ AHVDESDAAR
SRAEANVLAA SATVEAQQQR IAVLAAQREA AVAAVAQAQA ARALAEIDLE STVVRAPVGG
VIGNRQVRVG RLVASGAPLL DVVPLDNVWI VANFKETQLE HLRPGQRASI TIDGYPNAVL
EGVVDSFAPG SGTAFSLLPA DNATGNFVRV VQRVPVKIRF AGSPLPGRLV PGLSARVEID
LESGS