Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_4283 |
Symbol | |
ID | 5319119 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009620 |
Strand | + |
Start bp | 774688 |
End bp | 775785 |
Gene Length | 1098 bp |
Protein Length | 365 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640776088 |
Product | secretion protein HlyD family protein |
Protein accession | YP_001313021 |
Protein GI | 150376425 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.638187 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACTCGC TCGAGGACAA GATCGCCATC ATCACCGACG CAAGTTCAGC GAATGGTGTC GCCACGTCGC GATCCGTCAG GAGAAAGATG ATTGGCCTGG TGCTGTGCCT CGGGTCGGTC GTCGTCGTGG CAACCGGATG GTCGTGGACC TGCGAGAACG GTGCGATGTC GACCGACAAT GCCTATGTCC GCGGCGACGT CACCGCGCTT GCCCCAAAGG TCGCGGGCTA TGTCACGGCG GTGGGGGTCG AGGACAACCA AGCAGTCCGG GCAGGCGACA TCCTGTTCCG CATCGACGAT CGCGACTACC GCGCAAGGCT GGCGCAGGCC GTGGCCAATG TCGAAGCCGC GCAGGCGCGG CTGACCAATG TCGATGCGGA GAAGGAGCTT CAGCATGCCC TGATCCGCCA GGCCGAAGCG CAGCGACGTT CGGCCATTGC GGAGCTGAAT CTCGCGAGCA AGGCATATGA TCGCCGCCGC GAACTCATCC GGAGCAACAC CGTAAGCCAG GCGCATGTCG ACGAAAGCGA TGCTGCCAGG TCGAGAGCCG AGGCGAACGT GTTGGCGGCT TCCGCCACGG TAGAGGCTCA GCAGCAGCGC ATTGCCGTGC TCGCGGCGCA GCGGGAAGCC GCCGTCGCTG CGGTGGCGCA GGCACAGGCC GCGCGCGCCC TCGCCGAAAT CGATTTAGAG AGCACCGTGG TGCGCGCGCC CGTCGGCGGC GTCATAGGCA ACCGCCAGGT CCGCGTCGGC CGGCTTGTTG CGTCGGGCGC TCCGCTGCTG GATGTCGTTC CCCTCGACAA TGTCTGGATC GTCGCGAACT TCAAGGAAAC TCAGCTCGAA CACCTCCGGC CCGGTCAGCG CGCCAGCATC ACCATCGACG GTTATCCGAA CGCGGTGCTC GAAGGCGTGG TCGACAGTTT TGCGCCAGGC AGCGGCACTG CCTTCAGCCT GCTGCCCGCA GACAACGCAA CGGGCAACTT CGTTCGCGTC GTCCAGCGCG TGCCCGTGAA GATCCGGTTT GCCGGCAGTC CGCTGCCCGG CCGCCTCGTG CCCGGCCTGT CGGCGCGGGT CGAGATCGAT CTGGAGAGCG GTTCATGA
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Protein sequence | MDSLEDKIAI ITDASSANGV ATSRSVRRKM IGLVLCLGSV VVVATGWSWT CENGAMSTDN AYVRGDVTAL APKVAGYVTA VGVEDNQAVR AGDILFRIDD RDYRARLAQA VANVEAAQAR LTNVDAEKEL QHALIRQAEA QRRSAIAELN LASKAYDRRR ELIRSNTVSQ AHVDESDAAR SRAEANVLAA SATVEAQQQR IAVLAAQREA AVAAVAQAQA ARALAEIDLE STVVRAPVGG VIGNRQVRVG RLVASGAPLL DVVPLDNVWI VANFKETQLE HLRPGQRASI TIDGYPNAVL EGVVDSFAPG SGTAFSLLPA DNATGNFVRV VQRVPVKIRF AGSPLPGRLV PGLSARVEID LESGS
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