| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4263 |
|---|
| Symbol | |
|---|
| ID | 5319014 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | - |
|---|
| Start bp | 751380 |
|---|
| End bp | 752906 |
|---|
| Gene Length | 1527 bp |
|---|
| Protein Length | 508 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640776068 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001313001 |
|---|
| Protein GI | 150376405 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1129] ABC-type sugar transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.208543 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATCCGG AAGCGGTCGA CGCAGCACGC GTCGTGCTGG AAGCGCGTCG CATCAGCAAG
TCGTTCAGCG GCGTGCAGGT ACTCTTCAGC GTCAATTTCG AGCTTCGCGC CGGCGAAATC
CACGCCCTGA TGGGCGAGAA CGGGGCCGGC AAGTCTACAC TCGTCAAGAT TCTCTCGGGC
TTCGAGCAGC CATCCTCCGG CGAGGTCCTT CTCGACGGCG AGCGGGTGAC TTTTCCTGCG
AATGGCGCGG CCGAAGCTCT GGGCATCGTC ATCATTCACC AGGAATTCAA TCTTGCCGAG
CATCTGACGG TTGCCGAAAG CCTGTTCCTG GGCCGAGAGG TGACGCGATT CGGCATGCTC
GATCGGAAAT ATATGCGCGC CGAGACGCGC CGGGTTCTCG ATCTTCTCGG TTGTAACGTG
GACGCGAACG CCCTGATCGG GAGCCTGTCC ATCGCCGAAA AACAGATGGT CGAGATCGCC
AAAGCCATCA GTCGCGACGC GCGGATCGTC TTCATGGACG AGCCGACGGC GGTTCTCTCG
CGCGAAGAGA CAAGTTTCCT TTTCCGCCAG GTACGCAAGC TGCGTGACCG TGGCACGAGC
TTCGTCTTCG TGTCGCATAA GCTCGACGAG GTCATCGAAC TGACGGACCG GGTCACGGTG
CTGCGAGATG GTCAATGGGT GAAGACCGCC CCGACATCCA TGCTCGACGG CGAGTCGATC
GCACAGCTCA TGGTCGGCCG CGAAATGTCC AGCCTCTATC CCGCCAAAAA CGAACCTGAT
GTCGACGAAG AGGTCGTCCT GCGTGTGGAT GCTCTCTCGA CCGATTACGT CAAGGACGCC
AGTTTTGAGG TCCGCAGAGG CGAAATACTC GGATTCTCGG GAATGATCGG TTCCGGCCGG
ACCGAACTCA TGGAGGCCGT CGCGGGCCTC AGGCACCGCC TCTCGGGCGA GGTGGCGATT
CGTGGAGAAA GCGTACCCTC CGGCGACGTC CACGCGGCCA ACCGGTGCGG CCTTGCCTAT
ATGACGAAGG ACCGCAAGGC GAAGGGTCTG CTGCTCAATT CCGGCATGAC GGCAAACCTG
ACGCTGCAGT CACTCGGCCG CCATGCCCGC ATCGGCTATC TCAGCCCGGC GAGCGAGGCC
GCCGCACTCG AAAGGGCCCG CCGCAGATTC GATATCCGTG TGCGCGACGG CAATGTGGTT
GCCAGGCGCA TGTCCGGCGG CAATCAGCAG AAGCTGCTGC TCGCCAAGGT GATGGAGACG
GAACCGGACA TCATCATCAT CGACGAGCCG ACGCGCGGCA TCGATGTCGG CACCAAGCAG
CAGATCTATC ATTTCATCTC GGCGCTGGCG CGGGACGGTA GCTCGATCAT CGTCGTCTCA
TCCGAAATGC CTGAGGTCAT CGGGCTTTGC ACCAGGGTCG CGGTGATGCG CGAGGGGCGT
ATCGTAGGCA TGCTCGAAGG AGACGAGATC TCCGAGCAAG AAATCATGCG CTACGCGGCC
GGACTGAAGA AAATGGCTGC TGCCTGA
|
|---|
| Protein sequence | MDPEAVDAAR VVLEARRISK SFSGVQVLFS VNFELRAGEI HALMGENGAG KSTLVKILSG
FEQPSSGEVL LDGERVTFPA NGAAEALGIV IIHQEFNLAE HLTVAESLFL GREVTRFGML
DRKYMRAETR RVLDLLGCNV DANALIGSLS IAEKQMVEIA KAISRDARIV FMDEPTAVLS
REETSFLFRQ VRKLRDRGTS FVFVSHKLDE VIELTDRVTV LRDGQWVKTA PTSMLDGESI
AQLMVGREMS SLYPAKNEPD VDEEVVLRVD ALSTDYVKDA SFEVRRGEIL GFSGMIGSGR
TELMEAVAGL RHRLSGEVAI RGESVPSGDV HAANRCGLAY MTKDRKAKGL LLNSGMTANL
TLQSLGRHAR IGYLSPASEA AALERARRRF DIRVRDGNVV ARRMSGGNQQ KLLLAKVMET
EPDIIIIDEP TRGIDVGTKQ QIYHFISALA RDGSSIIVVS SEMPEVIGLC TRVAVMREGR
IVGMLEGDEI SEQEIMRYAA GLKKMAAA
|
|---|
| |