| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4259 |
|---|
| Symbol | |
|---|
| ID | 5319010 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | + |
|---|
| Start bp | 747110 |
|---|
| End bp | 747787 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640776064 |
|---|
| Product | two component transcriptional regulator |
|---|
| Protein accession | YP_001312997 |
|---|
| Protein GI | 150376401 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.648982 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCGTATCT TGCTGGTTGA AGACAATCGG GCTCTGGCGG AGGGCCTTTC AACGCTTCTG
CGCGGCAGCG GCTATGCCGT CGATGTCGTG AGCGACGGCG CATCGGCGCA TGCGGTCGCT
GCGGCAGAGA GTTTCGACCT CGTGATCCTG GATTTGAACC TGCCGGAAAT GGACGGGCTG
GACGTGCTGC GCGCCATGCG GGCACGGCAA AATCGTGCGG CGGTTCTCAT CCTGACGGCT
CGCGGTGCGC CGGAAGAACG GGTCAAGGGT CTGGATCTCG GTGCCGACGA TTATCTGATC
AAGCCGTTCG ACATCGGCGA ATTCGAGGCA CGCGTGCGGG TTCTCCTGCG GCGGCAGGCG
GGATTGCGGG CTTCCGTCGT CAGTTACGGC GAGGTCTCGT TGGATTTGAC AACGCGGAGT
TTCTCCTCGG CGGGAATGCC GATCGAGATC CCGGCGCGTG AGCTCGGCCT CCTGGAGCTC
CTGTTCATGC GCGCCGGCAA GGTCGTCGCC AAGGATGCGA TCGTGCAATC GTTGACCGAC
CTCGACGACG ATCTGAGCCC GAATGCAATC GAGCAATATG TGAGCCGCCT GCGCAAGCGG
CTGTCGCCCT ACGGCCTCAC CGTCCGGACC GCTCGGGGGA TCGGCTATTA TCTCGACAAG
ACGGCCGATC CCGAATGA
|
|---|
| Protein sequence | MRILLVEDNR ALAEGLSTLL RGSGYAVDVV SDGASAHAVA AAESFDLVIL DLNLPEMDGL
DVLRAMRARQ NRAAVLILTA RGAPEERVKG LDLGADDYLI KPFDIGEFEA RVRVLLRRQA
GLRASVVSYG EVSLDLTTRS FSSAGMPIEI PARELGLLEL LFMRAGKVVA KDAIVQSLTD
LDDDLSPNAI EQYVSRLRKR LSPYGLTVRT ARGIGYYLDK TADPE
|
|---|
| |