| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4217 |
|---|
| Symbol | |
|---|
| ID | 5319227 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | + |
|---|
| Start bp | 700245 |
|---|
| End bp | 701417 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640776022 |
|---|
| Product | extracellular ligand-binding receptor |
|---|
| Protein accession | YP_001312955 |
|---|
| Protein GI | 150376359 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAGGA TCATTCTGGC CGCGCTCGCG GCCCTGGTAA CGAGCGCGGC GGCGCATGCC
GATGCGATCA AGGTCGGCGT CGTTGGGCCA TTTTCAGGGC CTTTTGCGCT GCAGGGAAAG
AACTTCAAGG CGGGAATCGA CGCCTATATG GCGCTGAGCG GGGTCAAGGT CGGCGAAGAC
GATATCGAGA TCATCTATCG CGACGTACCG CAGGCGGATC CGGCCCAGTC CAAGGCGCTG
GCACAGGAAC TGGTTGTCAA GGAAGGCGTG CAGTATCTCG CCGGGTTCTA TTTCACGCCG
GATGCGATGG CCGTCACGCC GTTGCTCGAG CAGGCGAACG TGCCGCTGGT GATCATGAAT
GCCGCAACAT CGGCGATCGT CACCAAGAGC CCCCTTGTGG TGCGCACTTC CTTCACGCTT
TGGCAGACAT CCACGCCGAT CGCCAAGGTG GCGAGGGAAG CCGGCGTCTC GAAGATTATC
TCGGTCGTCA GCGACTACGG CCCGGGCATC GACGCGGAGA ACGCATTCAA GACGGGCTTC
GAAGCCGTGG GCGGCCAGGT CGTCGAGGCG ATCCGCATGC CGCTGTCGAC CAACGACTTC
TCGCCGATCA TGCAGCGCAT CAAGGACTCC GGCGCAGAAG GGGTCTTTGC CTTCCTGCCG
TCCGGCCCGA CGACGCTCGG CTTCGTCAAG GCTTTCAACG AAAACGGGCT AAAGGACGGC
GGCGTCAAAT TCTTCGCCCC CGGCGATCTC ACACAGGAGT CCGACCTGCC GGCGCTGGGT
GATGCCGCGC TCGGCCTGCA AACGACTTTC CACTACTCCG TCTCGCATGA TTCTCCCGAG
AACAAGGCGT TCGTCGAGGC GGCCGCCAAG GCGATCGGCA ATCCGACTGA GCTGTCCTTC
CCCTCGGTCG GCGCCTATGA CGGCATGCAT GTCATCTATA AGATGATCGA GGCGACAGGA
GGCGAGCAGA ACGCTCAGAA GGCGGTCGAC GCGGTCAAGG GGCTCTCCTG GACGAGCCCG
CGCGGACCGG TTTCGATCGA TCCCGAATCG CGCCATATCA CGCAGAACAT CTATCTGCGC
GAGGTCTCAA AGGCCGACGA TGGCACCTAT TACAACAAGG AAATCCAGAC CTTCGAGAAA
CAGGGCGATC CCGGCCTCGC GGCGCTGAAG TGA
|
|---|
| Protein sequence | MRRIILAALA ALVTSAAAHA DAIKVGVVGP FSGPFALQGK NFKAGIDAYM ALSGVKVGED
DIEIIYRDVP QADPAQSKAL AQELVVKEGV QYLAGFYFTP DAMAVTPLLE QANVPLVIMN
AATSAIVTKS PLVVRTSFTL WQTSTPIAKV AREAGVSKII SVVSDYGPGI DAENAFKTGF
EAVGGQVVEA IRMPLSTNDF SPIMQRIKDS GAEGVFAFLP SGPTTLGFVK AFNENGLKDG
GVKFFAPGDL TQESDLPALG DAALGLQTTF HYSVSHDSPE NKAFVEAAAK AIGNPTELSF
PSVGAYDGMH VIYKMIEATG GEQNAQKAVD AVKGLSWTSP RGPVSIDPES RHITQNIYLR
EVSKADDGTY YNKEIQTFEK QGDPGLAALK
|
|---|
| |