| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4197 |
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| Symbol | |
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| ID | 5318955 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | - |
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| Start bp | 678214 |
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| End bp | 678885 |
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| Gene Length | 672 bp |
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| Protein Length | 223 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640776002 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_001312935 |
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| Protein GI | 150376339 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00284291 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCTGTCA CTGAAATCGA CCTTTGCCTG AATGCGTCGC CACCCGCGCA GGATCTCGCC
CGATTACGGG CGATCATGCA GGCCCATAAC CGCAAGCTTT ATCGCATCGC CCGGAGCATC
CTACGCAACG ACAGCGATGC GGAAGACGTG CTGCAGGAGG CCTATGTCCG TGCCTTTACG
CGTTTCCAAG ATTTTCGCGG TGACGCTGCG ATCACGACCT GGCTTGCCCG GATCGTCATC
AACGAGGCGC TCGGCCGCCT CCGGAAAAGA CGGCGCCAGA TGAAACTGGC CAGCGACATG
CGGCAGTCGC AAGAGGCGGA GATTATCGCC TTTCCCCTCA ATTCAGGCAT CAGCGATCCG
GAAAAGACGA TGGCACAGCG GCAAATTCTC GATCTCGTCG AAAGGCTGAC GGACGATCTC
CCGGACGCCT ACCGGACGGT ATTCGTGCTA CGCGTCATCG AGGGGTTAAG CAATGAAGAG
ACGACCGCCC TTCTCGGTCT CAAGCCGGAA ACGGCACGCA CAAGGCTGCA CCGGGCGCGC
CGGCTGCTCA AGGAGCAACT GGAACGGCAG ATCGGCCCGG TTCTGCTCGA TGCCTTCCCC
TTCGCGGGAA TGCGCTGCGA GCGGTTGACC GAGGCCGTTC TCGCCCGCCT CGCTGAAATC
CCAATGAAAT AG
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| Protein sequence | MPVTEIDLCL NASPPAQDLA RLRAIMQAHN RKLYRIARSI LRNDSDAEDV LQEAYVRAFT
RFQDFRGDAA ITTWLARIVI NEALGRLRKR RRQMKLASDM RQSQEAEIIA FPLNSGISDP
EKTMAQRQIL DLVERLTDDL PDAYRTVFVL RVIEGLSNEE TTALLGLKPE TARTRLHRAR
RLLKEQLERQ IGPVLLDAFP FAGMRCERLT EAVLARLAEI PMK
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