| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4185 |
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| Symbol | |
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| ID | 5319351 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | + |
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| Start bp | 664348 |
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| End bp | 665961 |
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| Gene Length | 1614 bp |
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| Protein Length | 537 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640775990 |
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| Product | inner-membrane translocator |
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| Protein accession | YP_001312923 |
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| Protein GI | 150376327 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
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| TIGRFAM ID | [TIGR03409] urea ABC transporter, permease protein UrtB |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.940988 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.195326 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTACCGCA TCATCCAAAC CGTTCTGGCC ATGTTGTTCC TTTTCGCCGC GATGCCGCAG
GGTCTTCGCG CAGCAGAGGG ACTGCGCAAT CTGGTGAACG CGCTCGGCGA GGCGAAACTT
TCCGCGATGG ATGAGCATAT AGCCGCCCTG GCAAAGACCG GAGAGCCTGA AGTCGTCGCG
ATTCTCGATG CGCTCGGCGC GGGCAACCTC TATGCCCGCA AGACAGACGG CCAGGTCTTT
CTCACCAAAG AGAGCGGTTC GAACCTTGCA CTCATCGACC CTATCTCAGG CGAAAGCGCC
GGCGAAACGC CCAAGGCGGC GATGTCGAAG ATCAAGGTGA ACAACAGCGT GCGCCGCGCC
GTTCGCGCGG CCCTTGGCGG TTTGACGCTG CTCAGCCCCG ATCGCGCTCA GCGCCTCAAG
GCCGCGCAAT CCGTGCTGCA AACGCCGGAT GTCGACGCGC TTGACGCCGT CGAAAATGCG
CTGGTTGCCG AGAAGGACGA AGCCGTTCGC ACGGTCCTTG AACAGGCGCG CGCGGCGATG
CTGCTTGCTT CCGACCGGCC GATTGAAGAG AAGAAGGAGG CGGTGCGGCT GCTTAGGGAA
AACGGCGGCC GCGAGGCGTT GCCGGTCCTT TCCGCTGCAC TCGGTTCCGC CGAGAACGGC
CTTGAGCAGG ATATCGAGGC AGCCATCGCC AGCATAGAAC AGGCGCAAGA GTTCTGGAAT
GCAGGCCAGA ACGTCTGGTA CGGACTTTCG CTCGGCTCTG TGCTGCTGCT TGCGGCGATC
GGGCTTGCAA TCACCTTCGG CGTCATGGGC ATCATCAACA TGGCGCATGG CGAGATGGTG
ATGCTCGGTG CCTATACGAC CTTCCTCGTT CAGGATGTCG TACGGACCTC CTTTCCCCAC
CTCTTCGAGT GGTCACTGGC GATCGCGCTG CCGCTCGCCT TTTTATTCAC CGGCACCGTG
GGTCTCGTGC TTGAGCGCGG TGTCATTCGC TTCCTTTACG GGCGTCCGCT CGAAACGCTG
CTCGCTACCT GGGGCATATC GCTGATCCTG CAGCAGTCGG TGCGGACGAT CTTCGGACCC
ACCAACCGCG AAGTCGGCAA CCCCTTCTGG ATGTCCGGCG CTTTCGAGCT CGGAGGACTG
ACGATTACCT GGAACCGCCT CTGGATTATC GTCTTCGCGC TGGCCGTCTT CGCCGCGCTC
CTGTTCCTCC TCAAGAAGAC GCCGATGGGC CTGCAGATGC GCGCCGTGAC GCAGAACCGG
CGCATGGCCT CCTCGATGGG CATCCGAACG CCTCTCGTTG ATGCGCTCAC CTTCGCACTC
GGTTCCGGTA TCGCGGGCAT CGCGGGCGTC GCACTTTCGC AGATCGACAA TGTTTCGCCG
AACCTCGGGC AGGGTTACAT CATCGACAGC TTCATGGTCG TGGTTTTCGG TGGGGTCGGC
AATCTCTGGG GCACGCTCGT CGGAGCATTT TCGCTGGGCA TCCTCAACAA GTTCCTCGAG
CCTTATGCCG GAGCCGTGCT CGGCAAGATA TTGGTGCTCG TGCTGATCAT CCTCTTCATT
CAGAAGCGGC CGCGCGGGCT CTTCGCACTC AAGGGCCGGG CGGTGGAAGC ATGA
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| Protein sequence | MYRIIQTVLA MLFLFAAMPQ GLRAAEGLRN LVNALGEAKL SAMDEHIAAL AKTGEPEVVA
ILDALGAGNL YARKTDGQVF LTKESGSNLA LIDPISGESA GETPKAAMSK IKVNNSVRRA
VRAALGGLTL LSPDRAQRLK AAQSVLQTPD VDALDAVENA LVAEKDEAVR TVLEQARAAM
LLASDRPIEE KKEAVRLLRE NGGREALPVL SAALGSAENG LEQDIEAAIA SIEQAQEFWN
AGQNVWYGLS LGSVLLLAAI GLAITFGVMG IINMAHGEMV MLGAYTTFLV QDVVRTSFPH
LFEWSLAIAL PLAFLFTGTV GLVLERGVIR FLYGRPLETL LATWGISLIL QQSVRTIFGP
TNREVGNPFW MSGAFELGGL TITWNRLWII VFALAVFAAL LFLLKKTPMG LQMRAVTQNR
RMASSMGIRT PLVDALTFAL GSGIAGIAGV ALSQIDNVSP NLGQGYIIDS FMVVVFGGVG
NLWGTLVGAF SLGILNKFLE PYAGAVLGKI LVLVLIILFI QKRPRGLFAL KGRAVEA
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