| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4177 |
|---|
| Symbol | |
|---|
| ID | 5318586 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | - |
|---|
| Start bp | 653182 |
|---|
| End bp | 655044 |
|---|
| Gene Length | 1863 bp |
|---|
| Protein Length | 620 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640775982 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_001312915 |
|---|
| Protein GI | 150376319 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.661658 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.571454 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACAATA CCGGCATGAG CAAACACGCA GACATGGAAG ATCCGGCGGC GCTTCGCAGC
CGCGCCCGTC GATCCTGGCT CGTGTTTGCG GCCGTCGCCC TGGTCCTCGT CGCTGCCGGC
CTCCTTTTTG CCCGCGACTA CGGGCGGTCA CGGGCCCTCT TCAGCCTTGC CGGTCAAAGC
CGGATCGACG CCAGCCTCAA AGCCTCGCTT CTCCGGGCGG TCGTGGAGCG GCAGCGCGCC
CTTCCGCTGG TTCTCGCCGA CGACGCGGCC ATTCGTGGCG CGCTGCTTAC CCCGGATCGG
CAATCGCTGG ACCGGATCAA CCGCAAGCTC GAAGGTTTGG CGACGAGCGC CGAAGCGGCG
GTCATCTACC TCATCGACCG GAACGGCACC GCCATCGCCG CCAGCAATTG GCGGGATTCC
ACCAGCTTCG TCGGAAACGA TTATGCCTTC CGCGATTATT TCCGGCTCGC CATGCGCGAC
GGCATGGCCG AGCATTTCGC CATGGGCACA GTAAGCAAAC GGCCCGGGCT CTATATCTCC
CGTCGCGTCG CTGGGCCCGG TGGCCCGCTG GGGGTGATCG TTGCCAAGCT CGAATTCGAC
GGAGTCGAGG CGGATTGGCA GGCCTCCGGC AAGCCGGCCT ATGTCACCGA CCGGCGCGGC
ATCGTCCTCA TCACCAGCAT GCCCTCCTGG CGCTTCATGA CGACCAAGCC GATCGCGCGG
GAGCGCCTTG CCCCAATTCG TGAAAGCCTG CAATTCGGTG ACGCACCGCT GTTGCCGCTC
CCCTTCCGCA AGGTCGAGGC GCGGCCCGAT GGCTCCTCCA CCCTCGACGC CCTGCTGCCG
GGCGAGGCGA ACGCAGCCTT TCTGCGCGTC GAGACAATGG TGCCGTCGAC GAACTGGCGC
CTCGAGCAAT TGTCGCCGCT GAAAGCGCCG CTTGCCGCCG GAGCACGCGA AGCGCAGCTC
ATCACGCTTG CCGCGCTGGT GCCGCTTCTG GGGCTGGCGG CATACCTCCT GCGCCGGCGC
CAGGTGATCG CCATGCGCAG CGCCGAGGAG CGGCTCGCCC GCAGCAAACT CGAGACAAGC
GTCGAGGAAC GGACGCGCGA TCTCCGCATG GCACGCGACC GGCTCGAAAC CGAAATCGCC
GATCACCGCC AGACCACCGA GAAATTGCAG GCAGTCCAGC AGGACCTCGT CCAGGCAAAC
CGGCTGGCGA TCCTCGGCCA GGTCGCAGCC GGCGTCGCCC ATGAGATCAA CCAGCCTGTC
GCCACCATCC GCGCCTATGC GGACAATGCC CGCACATTTC TCGAGCGCGG TCAGAGCGCC
ACCGCAGCCG AAAACATGGA GAGCATCGCC GAACTCACCG AGCGCGTCGG CGCCATTACC
GACGAACTTC GTCGCTTCGC CCGCAAGGGT CATTTCGCCG CCGGGCCGAC CGCGATGAAG
GATGTGATCG AGGGAGCGCT CATGCTGCTC CGCAGCCGTT TTGCCGGGCG GATGGACGCA
ATCCGCATCG ATCTGCCGCC GGATGGCCTT CAGGTATTCG GCAATCGCAT CCGGCTGGAG
CAGGTCCTGA TCAACCTGCT GCAGAACGCG CTCGAGGCGA TCGGCGACAG CGGGAATGGC
GCGATCAAAG TGTCGTGCGA GGAAACGGCC ACCGCCGTAA CGCTCACCGT CGCCGACAAC
GGTCCGGGGA TTCCGGCCGA TGTCCGCGAA GAGCTGTTCA CGCCCTTCAA CACCTCGAAG
GAAGACGGGC TTGGTCTCGG CCTGGCAATC TCCAAGGAGA TCGTCTCCGA CTATGGCGGC
ACGATCGAGG TCGCGAGCAG CCCGTCCGGA ACGACATTTA TCGTAAATCT CATGAAGGCA
TGA
|
|---|
| Protein sequence | MHNTGMSKHA DMEDPAALRS RARRSWLVFA AVALVLVAAG LLFARDYGRS RALFSLAGQS
RIDASLKASL LRAVVERQRA LPLVLADDAA IRGALLTPDR QSLDRINRKL EGLATSAEAA
VIYLIDRNGT AIAASNWRDS TSFVGNDYAF RDYFRLAMRD GMAEHFAMGT VSKRPGLYIS
RRVAGPGGPL GVIVAKLEFD GVEADWQASG KPAYVTDRRG IVLITSMPSW RFMTTKPIAR
ERLAPIRESL QFGDAPLLPL PFRKVEARPD GSSTLDALLP GEANAAFLRV ETMVPSTNWR
LEQLSPLKAP LAAGAREAQL ITLAALVPLL GLAAYLLRRR QVIAMRSAEE RLARSKLETS
VEERTRDLRM ARDRLETEIA DHRQTTEKLQ AVQQDLVQAN RLAILGQVAA GVAHEINQPV
ATIRAYADNA RTFLERGQSA TAAENMESIA ELTERVGAIT DELRRFARKG HFAAGPTAMK
DVIEGALMLL RSRFAGRMDA IRIDLPPDGL QVFGNRIRLE QVLINLLQNA LEAIGDSGNG
AIKVSCEETA TAVTLTVADN GPGIPADVRE ELFTPFNTSK EDGLGLGLAI SKEIVSDYGG
TIEVASSPSG TTFIVNLMKA
|
|---|
| |