Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_4173 |
Symbol | |
ID | 5318582 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009620 |
Strand | - |
Start bp | 646431 |
End bp | 647435 |
Gene Length | 1005 bp |
Protein Length | 334 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640775978 |
Product | glycine oxidase ThiO |
Protein accession | YP_001312911 |
Protein GI | 150376315 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
TIGRFAM ID | [TIGR02352] glycine oxidase ThiO |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.269428 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCGTCC TGATCAGGGG GGCCGGCGTT GCCGGCCTCA CCGCCGCCCA TGAACTTCTG GCGCGCGGCG CCGAGGTAAC CGTCATCGAA AATGCCGAGG GCTTTGGCCG GGCCGCGTCC TGGTATGCCG GCGGCATGCT GGCGCCGTGG TGCGAACGGG AAAGCGCCGA GGAAGCCGTC CTGACGCGCG GCATCGGCGC CGCCGACTGG TGGGAAGCCG CCCTTCCTGC CGGTTCCGTC CATCGCAACG GCACGCTCGT CGTCGCCCAA CCGCGCGACG GAGCCGAACT CAGGCGCTTT GCGGCCCGCA CCTGCGGCTT TCGCTGGCTT AACGCGGAGG AGATCGGGGC GCTGGAACCG GCGCTCGCCG GCCGCTTCCG GCAGGCGCTG TTCTTTCCGG ACGAGGCGCA CCTCGATCCA CGCCGGGCGC TCTCGGCGCT GCGACAAAGA CTGGCGGCGC GCGGCGTCAC CTTCGTGGCG GAAGAGCCGG ACGGGCGCGG GGCCGTGCTC ACCGTCGACT GCACCGGTGC GGCAAGGATA GGCGGGATCG ACGGGCTGCG GGGCGTGCGA GGCGAGATGC TTTATCTTGC GACCGACGAG GTCTCACTCT CTCGCCCGGT GCGCATGCTG CATCCTCGGA TCCCGCTCTA TATCGTCCCG CGCAACGGCG GTCTCTTCAT GTGCGGGGCA ACGATGATCG AGAGCGACGA AGCCGGTCCG ATCACCGCCC GATCGCTGAT GGAGCTGCTG AACGCCGCCT ATGCGCTCCA TCCTGCTTTT GCCGAGGCCC GCCTTGTGGA GACGGGCACC GGCGTGCGAC CGGCTTTTGC CGACAACCTG CCGCGTGCCG TGCGCCGCGA GAGCACGATT ACCGTCAACG GTCTCTATCG CCACGGATTC CTCCTGTCCC CGGCCATGGC CGGGGATGTG GCGGCGCTGG CCCTTGGCGA GAGATACCCA GAGGAGATGT CCGATGAAAC TTACGATCAA TGGCGAGGAA CATGA
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Protein sequence | MRVLIRGAGV AGLTAAHELL ARGAEVTVIE NAEGFGRAAS WYAGGMLAPW CERESAEEAV LTRGIGAADW WEAALPAGSV HRNGTLVVAQ PRDGAELRRF AARTCGFRWL NAEEIGALEP ALAGRFRQAL FFPDEAHLDP RRALSALRQR LAARGVTFVA EEPDGRGAVL TVDCTGAARI GGIDGLRGVR GEMLYLATDE VSLSRPVRML HPRIPLYIVP RNGGLFMCGA TMIESDEAGP ITARSLMELL NAAYALHPAF AEARLVETGT GVRPAFADNL PRAVRRESTI TVNGLYRHGF LLSPAMAGDV AALALGERYP EEMSDETYDQ WRGT
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