Gene Smed_4173 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_4173 
Symbol 
ID5318582 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp646431 
End bp647435 
Gene Length1005 bp 
Protein Length334 aa 
Translation table11 
GC content68% 
IMG OID640775978 
Productglycine oxidase ThiO 
Protein accessionYP_001312911 
Protein GI150376315 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0665] Glycine/D-amino acid oxidases (deaminating) 
TIGRFAM ID[TIGR02352] glycine oxidase ThiO 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.269428 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCGTCC TGATCAGGGG GGCCGGCGTT GCCGGCCTCA CCGCCGCCCA TGAACTTCTG 
GCGCGCGGCG CCGAGGTAAC CGTCATCGAA AATGCCGAGG GCTTTGGCCG GGCCGCGTCC
TGGTATGCCG GCGGCATGCT GGCGCCGTGG TGCGAACGGG AAAGCGCCGA GGAAGCCGTC
CTGACGCGCG GCATCGGCGC CGCCGACTGG TGGGAAGCCG CCCTTCCTGC CGGTTCCGTC
CATCGCAACG GCACGCTCGT CGTCGCCCAA CCGCGCGACG GAGCCGAACT CAGGCGCTTT
GCGGCCCGCA CCTGCGGCTT TCGCTGGCTT AACGCGGAGG AGATCGGGGC GCTGGAACCG
GCGCTCGCCG GCCGCTTCCG GCAGGCGCTG TTCTTTCCGG ACGAGGCGCA CCTCGATCCA
CGCCGGGCGC TCTCGGCGCT GCGACAAAGA CTGGCGGCGC GCGGCGTCAC CTTCGTGGCG
GAAGAGCCGG ACGGGCGCGG GGCCGTGCTC ACCGTCGACT GCACCGGTGC GGCAAGGATA
GGCGGGATCG ACGGGCTGCG GGGCGTGCGA GGCGAGATGC TTTATCTTGC GACCGACGAG
GTCTCACTCT CTCGCCCGGT GCGCATGCTG CATCCTCGGA TCCCGCTCTA TATCGTCCCG
CGCAACGGCG GTCTCTTCAT GTGCGGGGCA ACGATGATCG AGAGCGACGA AGCCGGTCCG
ATCACCGCCC GATCGCTGAT GGAGCTGCTG AACGCCGCCT ATGCGCTCCA TCCTGCTTTT
GCCGAGGCCC GCCTTGTGGA GACGGGCACC GGCGTGCGAC CGGCTTTTGC CGACAACCTG
CCGCGTGCCG TGCGCCGCGA GAGCACGATT ACCGTCAACG GTCTCTATCG CCACGGATTC
CTCCTGTCCC CGGCCATGGC CGGGGATGTG GCGGCGCTGG CCCTTGGCGA GAGATACCCA
GAGGAGATGT CCGATGAAAC TTACGATCAA TGGCGAGGAA CATGA
 
Protein sequence
MRVLIRGAGV AGLTAAHELL ARGAEVTVIE NAEGFGRAAS WYAGGMLAPW CERESAEEAV 
LTRGIGAADW WEAALPAGSV HRNGTLVVAQ PRDGAELRRF AARTCGFRWL NAEEIGALEP
ALAGRFRQAL FFPDEAHLDP RRALSALRQR LAARGVTFVA EEPDGRGAVL TVDCTGAARI
GGIDGLRGVR GEMLYLATDE VSLSRPVRML HPRIPLYIVP RNGGLFMCGA TMIESDEAGP
ITARSLMELL NAAYALHPAF AEARLVETGT GVRPAFADNL PRAVRRESTI TVNGLYRHGF
LLSPAMAGDV AALALGERYP EEMSDETYDQ WRGT