Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_4136 |
Symbol | |
ID | 5319278 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009620 |
Strand | - |
Start bp | 605247 |
End bp | 606521 |
Gene Length | 1275 bp |
Protein Length | 424 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640775941 |
Product | extracellular solute-binding protein |
Protein accession | YP_001312874 |
Protein GI | 150376278 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.518326 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACATTC AGGCGCGTGC CTATCTGCCG CGTATCGCTG CTCTCGCTCT CGCAGGCGCG AGCTTTCTGG GCGTGTCTGC GGCGCAGGCC AAGGAAATCA CCATCTGGTG CTGGGACCCG AACTTCAACG TCGCGATCAT GAAGGAGGCG GGCGACCGCT ACACGAAGAC GCATCCAGAC GTCACCTTCA ACATCGTCGA CTTCGCCAAG CTCGACGTCG AGCAGAAGCT GCAGACCGGC CTTTCCTCCG GCACCGCCGA CGCGCTTCCC GACATCGTTC TCATCGAGGA TTACGGCGCG CAGAAATACC TGCAATCCTT TCCGGGCGCC TTTGCGCCGC TCTCCGGCAC CGTCGATTAC TCCGGTTTCG CCCCCTACAA GGTCGAGCTG ATGACCCTCG ATGGTGAAGT CTACGGAATG CCCTTCGATT CCGGCGTCAC CGGGCTCTAT TACCGCAAGG ATTATCTCGA AGCCGCAGGC TTCAAGCCGG AGGACATGCA GGATCTCACC TGGGATCGTT TCATCGAGAT CGGCAAGCAG GTCGAGGCAA AGACCGGCAA GAAGATGATG GGCCTCGATC CCAACGACGC CGGCCTCGTC CGCATCATCA TGCAGTCGGC CGGGCAATGG TATTTCGACA AGGAAGGCAA GCCGAACATC ACCGGCAACG CGGCGCTGAA GGCAGCCCTC GAAACCATCG GCAAGATCAT GCAGGCCAAT ATCTACAAGC CTGCCAACGG CTGGTCCGAC TGGGTCGGTA CCTTCACCTC CGGCGATGTC GCGACCGTCG TCACCGGCGT CTGGATCACC GGCACCGTCA AGGCGCAACC GGACCAGTCC GGCAACTGGG GCGTCGCCCC CATACCGGCG CTCTCTATCG AAGGCGCCAC GCATGCCTCC AATCTCGGCG GCTCCAGCTG GTACGTGCTC GAAAGCTCCG AGGAGAAGGC AGAAGCGATC GATTTCCTGA ACGAGATCTA TGCCAAGGAC ATCGATTTCT ATCAGAAGAT ACTCCAGGAT CGCGGCGCGG TCGGCTCGCT GCTCGCTGCC CGCGGCGGCG CGGCCTACGA GGCCGCAGAC CCCTTCTTCG GCGGCGAGAA GGTCTGGCAG AACTTCTCCG AATGGCTGGC GAAGGTTCCC TCGGTCAATT ACGGCATCTT CACCAATGAG GCGGATCTCG CCGTTACCGC GCAGCTCCCA GCCGTCACCC AGGGAACGCC CGTCGACGAA GTGCTGAAGG CGATCGAGGC CGAGATCGCC GGCCAGATCC AGTAA
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Protein sequence | MDIQARAYLP RIAALALAGA SFLGVSAAQA KEITIWCWDP NFNVAIMKEA GDRYTKTHPD VTFNIVDFAK LDVEQKLQTG LSSGTADALP DIVLIEDYGA QKYLQSFPGA FAPLSGTVDY SGFAPYKVEL MTLDGEVYGM PFDSGVTGLY YRKDYLEAAG FKPEDMQDLT WDRFIEIGKQ VEAKTGKKMM GLDPNDAGLV RIIMQSAGQW YFDKEGKPNI TGNAALKAAL ETIGKIMQAN IYKPANGWSD WVGTFTSGDV ATVVTGVWIT GTVKAQPDQS GNWGVAPIPA LSIEGATHAS NLGGSSWYVL ESSEEKAEAI DFLNEIYAKD IDFYQKILQD RGAVGSLLAA RGGAAYEAAD PFFGGEKVWQ NFSEWLAKVP SVNYGIFTNE ADLAVTAQLP AVTQGTPVDE VLKAIEAEIA GQIQ
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