| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4122 |
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| Symbol | ligC |
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| ID | 5319315 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | - |
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| Start bp | 589394 |
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| End bp | 590461 |
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| Gene Length | 1068 bp |
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| Protein Length | 355 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640775928 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_001312861 |
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| Protein GI | 150376265 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.582664 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGTCGC CCGCAGATGG AAAGCCGACG AAGAAGGCCG CTCTGTCCAA GGCGGCTGAG
AAGACGGGCG GCTTTCCCCT GCCCGTCGGC ACGGCCCCTA TGGAAGCTCG CTCCGCGGCC
GAACTGCCGG GCGGCGGCCC ATGGCAGTAC GAGCCAAAGT GGGACGGCTT TCGCTGTCTC
GCGTTTAAAT CCGGCAGCGA CGTCGACATT AGGGCGAAAT CCGGCAAGCC GCTCGGGCGC
TTCTTCCCGG AAATTCTCGA TCTGCTGCAT CGGTTGGGGC CGAAGACGTT CGTTCTCGAT
GGCGAGTTGG TGATTGCAAT CGAGGGGCGC CTCTCCTTCG ACGCCCTGCA GATGCGCCTG
CATCCGGCGG CGAGCCGGGT TGAGAAGTTG TCGCTTGAAA CGCCGGCCAA ACTGATTCTC
TTCGACATGC TGGCCGACAC CGACGGAGCG GTGCTGACCG GCAAGCCTCT GAGGGAACGG
CGCGCTCGCC TCGAAGCCTT CGTCAAGGAG AACGCCGTAG CGAAGATGGT CGAGCTCTCG
CCTTCGACGC TGGACCGCCG GGAAGCCGGG CGTTGGCTGA CCTCATGGGA GGCCGGCGCC
ACTGATGGTG TCGTCGCAAA GCGACTGGAC GGCGCTTACG AATGCGGCGA GCGGACAATG
GTGAAGGTCA AACGCCTGAG GACGGCCGAT TGCGTTGTCG GCGGCTATCG CTACGAGAGC
AACGGTCCGC TCGTCGGTTC GCTCCTGCTT GGTCTCTATG ACGCCGAGGG GCTGCTGAAC
CATGTGGGCT TTACAGCGAC CATTGCGGAC AAGGAACGTG CTGCACTGAC GCGTCAGCTC
GAGGCTTTAC GGGAGCCGCC CGGCTTCACC GGTAAAGCGC CGGGTGGCCC CAGCCGCTGG
AGCAGCGAGC GCAGCGGCGA ATGGGAGCCG GTCCGACCGG AACTCGTCGT CGAGGTCCGG
TTCGACCATG TCGGCAATCG GCGCTTTCGC CACGGCACGA AACTCATGCG TTGGCGTTCG
GACAAGGACC CGCGTCAATG TACCTTCGAG CAGATCGCGC CGCCTTGA
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| Protein sequence | MASPADGKPT KKAALSKAAE KTGGFPLPVG TAPMEARSAA ELPGGGPWQY EPKWDGFRCL
AFKSGSDVDI RAKSGKPLGR FFPEILDLLH RLGPKTFVLD GELVIAIEGR LSFDALQMRL
HPAASRVEKL SLETPAKLIL FDMLADTDGA VLTGKPLRER RARLEAFVKE NAVAKMVELS
PSTLDRREAG RWLTSWEAGA TDGVVAKRLD GAYECGERTM VKVKRLRTAD CVVGGYRYES
NGPLVGSLLL GLYDAEGLLN HVGFTATIAD KERAALTRQL EALREPPGFT GKAPGGPSRW
SSERSGEWEP VRPELVVEVR FDHVGNRRFR HGTKLMRWRS DKDPRQCTFE QIAPP
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