Gene Smed_4111 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_4111 
Symbol 
ID5318546 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp576499 
End bp577659 
Gene Length1161 bp 
Protein Length386 aa 
Translation table11 
GC content63% 
IMG OID640775918 
Productdihydrolipoyllysine-residue succinyltransferase 
Protein accessionYP_001312851 
Protein GI150376255 
COG category[C] Energy production and conversion 
COG ID[COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTCGACC TCATCGACAT TCAGGCTCCT TTGGAGCAGG AGGGGACGAA AGCGGTTGTT 
CGCAACTGGC TCAGGGAAAT CGGCGAAAAG GTCAAATCGG GCGACCCGCT GGTCGAGCTT
GAAACGGATA AGGTGACCCA GGAGGTGGCG GCTCCTGCCG ACGGGGTGCT TCTCGAGATC
CTGATGCGGA ACGGCGACGA TGCCAGGCCC GGCGCCGTTC TCGGCCGGAT CGGCAGCGAG
CTTGCCGGAG GCGAAGATGC GCCGCATTAT TCCCCCGCCG TGCGACGGGC AGCGGAAGAA
TATGGCTTCG ATCCTGCGAC CATCACCGGC ACCGGCCGGG ATGGCCGTGT TACGCGCGGC
GACATGGACA GGGCGTTCGC GGCGCGGCAG GCGGGCGGAG CATCGCCCGA GCCCCGGCCC
GACGGCGGGA GAGGGGAGCC CGAATCCAGC CGGATACCGC ATAGCAGCAT GCGCGCCGCA
ATCGCCGAAC ATATGCTCAA CTCCGTAATG ACGGCGCCGC ATGTGACGGC CGTATTCGAG
GCAGATTTCT CGGCGGTGAC GCGTCATCGG GACGAACACA GGAAGAAGCT TGCGGCACGG
GGCGTCAATC TTTCCTACAC TGCCTATGTT GTTCTGGCCT CGCTGGCGGC GATGCGCGCG
GTTCCCGAGG TGAACAGCCG CTGGCACGAG GATGCGCTCG AAACATTCGA TGACATCAAT
ATCGGCGTTG GGATTTCCCT TGGTGGAAAG GGACTGGTCG TCCCTGTAAT CCGCCGCGCG
CAGAATCTGT CGCTGGCGGA GATTGCGGCC CGAATTCAGG ACCTGACGAC GCGCGCGCGT
TCCAACGCGC TCTCCCCCGC AGACGTGACG GGCGGCACGT TCACCATTTC CAATCACGGA
GTCTCCGGAT CCCTGCTCGC GACGCCGATC ATCATCAACC AGCCGCAATC GGCAATCCTC
GGTGTCGGGA AACTCGACAA GCGGGTGGTC GTTCGCGAGG TGGACGGCAT CGATACGATT
CAGATCCGGC CGATGGCCTA TGTGTCGCTG ACGATTGACC ATCGGGCACT GGACGGCCAC
CACACGAATG CGTGGCTAAC GGAATTCGTC CGTGTCCTCG AGAGCTGGCC GGGTGAAGCA
ACGAAGAACG GCTTGGCCTG A
 
Protein sequence
MVDLIDIQAP LEQEGTKAVV RNWLREIGEK VKSGDPLVEL ETDKVTQEVA APADGVLLEI 
LMRNGDDARP GAVLGRIGSE LAGGEDAPHY SPAVRRAAEE YGFDPATITG TGRDGRVTRG
DMDRAFAARQ AGGASPEPRP DGGRGEPESS RIPHSSMRAA IAEHMLNSVM TAPHVTAVFE
ADFSAVTRHR DEHRKKLAAR GVNLSYTAYV VLASLAAMRA VPEVNSRWHE DALETFDDIN
IGVGISLGGK GLVVPVIRRA QNLSLAEIAA RIQDLTTRAR SNALSPADVT GGTFTISNHG
VSGSLLATPI IINQPQSAIL GVGKLDKRVV VREVDGIDTI QIRPMAYVSL TIDHRALDGH
HTNAWLTEFV RVLESWPGEA TKNGLA