Gene Smed_4098 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_4098 
Symbol 
ID5318913 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp561556 
End bp562413 
Gene Length858 bp 
Protein Length285 aa 
Translation table11 
GC content65% 
IMG OID640775905 
ProductRNA polymerase sigma factor SigJ 
Protein accessionYP_001312838 
Protein GI150376242 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGCCGG CCACGCAGGC CGAGGCAGCG GCAAGTTTCG ATCCGCTGCG TCCGAAGCTG 
ATGCGTGTCG CCTATCGTAT GCTCGGCTCC GTGGCCGATG CCGAGGACAT GGTGCAGGAG
GCCTTCATCC GCTGGATGGG GGCCGACCGC GCGACGGTGC GCGAGCCGGA GGCCTTCCTG
CGCCGCACCG TTACCCGGCT CTGCCTCGAC CAGCTGAAAT CGGCGCGGCG CCAGCGCGAA
ACCTATGTCG GTCCCTGGCT TCCGGATCCC GTCGTTGAAG AGGAGGAAGA AGAAGACGTC
ACTTTGCCGC TGATGTTGGC GCTGGAACGC CTTTCCCCTC TCGAAAGAGC GGCGTTCCTG
CTGCATGACG TGTTCGGGCT CAGCTTCGAA GAGGTCGCGG CGACGGTCCA GCGCGACACC
GCCGCCTGCC GCCAGCTGGC CGCCCGCGCG CGCACCCATA TCCGCGAGGC GAGACCTCGC
TTCCATGTCG AGAAGGAGCG CGGTCTCGAG CTTGCCGAGG CCTTCTTCAC CGCCTCTCGC
AGCGGCGACA TGAACGCGCT CGGCGCGATG CTTGCGGCCG ACGTCAGCAT TCATGCCGAC
GGCGGCGGCA AGCGGCCGGC CGCAACTGTG CCGATCCTTG GGCTCGATGC CGTAATGAAA
GTTCATGAAA AACTGGCTGC CCTTTTCCAG GCGAACGGCT CGAAGCTTCT GCGCGTCGGC
TTCCTCAACG GGCTGCCCGG CTTCATCACG ATGGAGGCGG ACGGTGAAAT CCAGACCACC
GCCCTCGATA TAAAGGGCGG CAAAGTCGCG GCTATCTATG TGGTGCGCAA TCCCGACAAG
CTGAGGCACC TGCACTGA
 
Protein sequence
MTPATQAEAA ASFDPLRPKL MRVAYRMLGS VADAEDMVQE AFIRWMGADR ATVREPEAFL 
RRTVTRLCLD QLKSARRQRE TYVGPWLPDP VVEEEEEEDV TLPLMLALER LSPLERAAFL
LHDVFGLSFE EVAATVQRDT AACRQLAARA RTHIREARPR FHVEKERGLE LAEAFFTASR
SGDMNALGAM LAADVSIHAD GGGKRPAATV PILGLDAVMK VHEKLAALFQ ANGSKLLRVG
FLNGLPGFIT MEADGEIQTT ALDIKGGKVA AIYVVRNPDK LRHLH