Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_4098 |
Symbol | |
ID | 5318913 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009620 |
Strand | - |
Start bp | 561556 |
End bp | 562413 |
Gene Length | 858 bp |
Protein Length | 285 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640775905 |
Product | RNA polymerase sigma factor SigJ |
Protein accession | YP_001312838 |
Protein GI | 150376242 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGCCGG CCACGCAGGC CGAGGCAGCG GCAAGTTTCG ATCCGCTGCG TCCGAAGCTG ATGCGTGTCG CCTATCGTAT GCTCGGCTCC GTGGCCGATG CCGAGGACAT GGTGCAGGAG GCCTTCATCC GCTGGATGGG GGCCGACCGC GCGACGGTGC GCGAGCCGGA GGCCTTCCTG CGCCGCACCG TTACCCGGCT CTGCCTCGAC CAGCTGAAAT CGGCGCGGCG CCAGCGCGAA ACCTATGTCG GTCCCTGGCT TCCGGATCCC GTCGTTGAAG AGGAGGAAGA AGAAGACGTC ACTTTGCCGC TGATGTTGGC GCTGGAACGC CTTTCCCCTC TCGAAAGAGC GGCGTTCCTG CTGCATGACG TGTTCGGGCT CAGCTTCGAA GAGGTCGCGG CGACGGTCCA GCGCGACACC GCCGCCTGCC GCCAGCTGGC CGCCCGCGCG CGCACCCATA TCCGCGAGGC GAGACCTCGC TTCCATGTCG AGAAGGAGCG CGGTCTCGAG CTTGCCGAGG CCTTCTTCAC CGCCTCTCGC AGCGGCGACA TGAACGCGCT CGGCGCGATG CTTGCGGCCG ACGTCAGCAT TCATGCCGAC GGCGGCGGCA AGCGGCCGGC CGCAACTGTG CCGATCCTTG GGCTCGATGC CGTAATGAAA GTTCATGAAA AACTGGCTGC CCTTTTCCAG GCGAACGGCT CGAAGCTTCT GCGCGTCGGC TTCCTCAACG GGCTGCCCGG CTTCATCACG ATGGAGGCGG ACGGTGAAAT CCAGACCACC GCCCTCGATA TAAAGGGCGG CAAAGTCGCG GCTATCTATG TGGTGCGCAA TCCCGACAAG CTGAGGCACC TGCACTGA
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Protein sequence | MTPATQAEAA ASFDPLRPKL MRVAYRMLGS VADAEDMVQE AFIRWMGADR ATVREPEAFL RRTVTRLCLD QLKSARRQRE TYVGPWLPDP VVEEEEEEDV TLPLMLALER LSPLERAAFL LHDVFGLSFE EVAATVQRDT AACRQLAARA RTHIREARPR FHVEKERGLE LAEAFFTASR SGDMNALGAM LAADVSIHAD GGGKRPAATV PILGLDAVMK VHEKLAALFQ ANGSKLLRVG FLNGLPGFIT MEADGEIQTT ALDIKGGKVA AIYVVRNPDK LRHLH
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