| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4065 |
|---|
| Symbol | |
|---|
| ID | 5317894 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | + |
|---|
| Start bp | 526996 |
|---|
| End bp | 527913 |
|---|
| Gene Length | 918 bp |
|---|
| Protein Length | 305 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640775872 |
|---|
| Product | periplasmic binding protein/LacI transcriptional regulator |
|---|
| Protein accession | YP_001312805 |
|---|
| Protein GI | 150376209 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.870399 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGCTG CCGTCCTGGC GCTCATTGCC GGCACGGCCC ACGCCGAAAA CATCGGCATC
TCAATTGCCC GTTCCGACAG CGCGTTCCTC ACCATTCTGC GTAATGGCAT GCAGGATCAG
GCTGGCAAGC TCGATGGCGT CACCGTCCAG GTGGAGGACG CGCAGAACGA CACCAGCCGG
CAGCTCGACC AGGTGCAGAA CTTTGTCTCC TCCGGCGTCG ATGCGATCAT CGTCGTTGCC
GTCGACGGCG ATGGCACGCC GGCGCTGACG AAAATAGCGA CCGATGCGGG CATTCCGATC
GTCTATGCGA ATCATCCGCC GGCCGATGTC GACAAGCTCC CCGAGACGGC GGCCTTCGTC
GGCTCCAACG AGATCGATTC CGGCACGCTC GAGACGAAGG AAGTCTGCCG GTTGCTCGGC
GGCAAGGGTG CGGCCTACGT CCTCATGGGA CCGCTCAACA ACCACTCCTC TCTGATCCGC
ACGAAAGACA TCCATGACGT CATCGCCACC GACGAATGCA AGGGCATGAG CGTCATCGAG
GAGCAGAGCG CCAATTGGGA CCGGCTCGAG GCCGCCAACA TCATGACGAA CTGGCTCTCC
GCCGGACGAG AGTTCGACGC GGTGATCGCC AATAATGACG AGATGGCGAT CGGCGCGATC
CAGGCCATGA AGGCGGCCGG GATCGACATG TCGAAGGTCG TGGTGGGCGG CATCGACGCG
ACGCCGGACG GATTGGCCGC CATGGCTGCC GGCGACCTGG ACGTGACCGT CTTTCAGAAC
GCGATCGCTC AGGGAGCGGC CGCAATGGAC GCCGCAGTCG CGCTCTCGCG CGACCAGGAG
ACCGAGCGGC AGATCTGGGT TCCCTTCGAA CTGGTGACGC CGGAGAACAT GAAGGACTAC
GCGACGGCAA ATCAGTAA
|
|---|
| Protein sequence | MSAAVLALIA GTAHAENIGI SIARSDSAFL TILRNGMQDQ AGKLDGVTVQ VEDAQNDTSR
QLDQVQNFVS SGVDAIIVVA VDGDGTPALT KIATDAGIPI VYANHPPADV DKLPETAAFV
GSNEIDSGTL ETKEVCRLLG GKGAAYVLMG PLNNHSSLIR TKDIHDVIAT DECKGMSVIE
EQSANWDRLE AANIMTNWLS AGREFDAVIA NNDEMAIGAI QAMKAAGIDM SKVVVGGIDA
TPDGLAAMAA GDLDVTVFQN AIAQGAAAMD AAVALSRDQE TERQIWVPFE LVTPENMKDY
ATANQ
|
|---|
| |