| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4042 |
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| Symbol | |
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| ID | 5318609 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | - |
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| Start bp | 503521 |
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| End bp | 505338 |
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| Gene Length | 1818 bp |
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| Protein Length | 605 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640775850 |
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| Product | thiamine pyrophosphate binding domain-containing protein |
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| Protein accession | YP_001312783 |
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| Protein GI | 150376187 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGAATG CTTCCGACAT TCTCATAGAG ACGCTTATCG AATGGAAGGT CGAAGTGGTC
TTCGGCCTGC CGGGAGACGG CATCAACGGT ATCATGGAGG CGCTGAGGCG GCGGCAGGAC
CGCATCCGCT TCGTCTCCGT GCGCCACGAG CAGTCCGCTG CCTTCATGGC GTGCGCCTAT
GCCAAGTTCA CGGGCAGGCT CGGCGTTTGT CTTGCCACTT CGGGTCCGGG CGGAACGAAC
CTCCTGACCG GCCTCTACGA TGCGAAGCTC GATCAGATGC CGGTGCTGGC GATCACCGGC
ATGCAGTATC ATGACCTGAT AGAGACTTTT TCGCAGCAGG ACGTCGATCT CACCCGCGTC
TTCGAAAACG TCGCCGTCTA CAATGCTCAG GTGAACGATG CCGCCCACAT GGAAAATCTC
GCAAACCTCG CCTGCCGGTC GGCCCTCTCG AAGCGCGGGG TCGCGCATCT TTCGATCGCC
AACGACGTGC AAGAGCGTAT GGCCGGCGGT GGGCGGTCCC GCCGCAACCG CGAAGGGCAC
ATGCCGAGCC GCTTTTTCGA AGGCAGGCTG GTGCCGCGCG AAGACGATAT TCTGCGCGCG
GCGGACCTTC TGAATGCGGG CAGGAAGGTT GCGATTCTTG CCGGTCGCGG CGCGCTCGAG
GCAAAGGGGC TTTTGCGCGA GACGGCGGAC CTGTTGGGCG CGCCGGTGGC AAAAGCCCTG
CTCGGAAAGG CCGTGCTGCC CGACGACGAC CCGTTCACCA CCGGAGGCAT CGGAATTCTG
GGAACGGTAC CGTCGCAGGA GATCATGCAG CAATGCGACA CGCTGCTGAT CGTCGGTTCG
ACCTTCCCCT ATATCGAATA CTATCCGAAG CCCCACGCAG CCACCGGAAT CCAGATCGAT
CATGACCCGC AGCGCATCGG GCTTCGCTAT CCGGTCGAAG TCGGGCTTGT CGGCGCGGCG
GGAGAGACCC TTCGCATGCT CAATGAACGG CTTCAGCGCA AAGCAGACCG GACGTTTCTC
GAACAGGCGC AAGAGAAAAC GCGAAACTGG CGGCGTGAAT TGCGTGCCAT GGAGGGCGAC
AGGAGTTCTC CCCTGAAGCC GCAGGCCGCG GTCGGCGCGT TTGGCAGGCG CATCGCGGCA
AACGGCATCG TCGTCACAGA TTCCGGACAA AACACCGAAC TTGCGGCCCG CCATGTGGAT
CTCGGTGCCG ACCATATGTT TGCGGTATCG GGCGCACTCG CATCCATGGC CTCGGGTCTC
CCTTACGCGA TCGCGGCTGG CATCGCCATG CCCGCCCGTC CCATCTACGC GGTGGTGGGC
GATGGCGGCT TCGCCATGCA GCTCGGAGAA TTCGCCACGG CCGTCCGCTA TGAGATTCCT
TTGAAGCTCC TGGTGATCCG TAACGACATG CTGAACCAGA TCGCCTGGGA ACAGATGATG
TTCCTGGGCA ATCCGCAATT CGCCTGCGAG CTGCCGCCGA TCGACTTCGC CGCTGCGGCA
GAAGCCATGG GCGGCCGAGG CTTCACGATC CGGTCCTTCG ACGAAATAGA CGGGGTTCTG
GATCAGGCAT TCGCAGCCGA AGGACCGGTC GTCATTCAGG CGCTGGTCGA TCGCTACGAG
CCGCTGATGC CGCCCAAAAT GCCCGAGGAC TACGCCCGCA ATTTCCGTGC CGCGCTTCCG
CAAACGCCGG GACATGAGAA AATCGAAGAA AACCTCAGGC ATTCCTCCGC AGGCAGGAAA
GTCACCGAGG AGGAGCCGCA GGCACCACAT GAAGCGGCGC CGGACGCCAA TACCGGTGAC
CTGCCAGGGA TACCGTAG
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| Protein sequence | MPNASDILIE TLIEWKVEVV FGLPGDGING IMEALRRRQD RIRFVSVRHE QSAAFMACAY
AKFTGRLGVC LATSGPGGTN LLTGLYDAKL DQMPVLAITG MQYHDLIETF SQQDVDLTRV
FENVAVYNAQ VNDAAHMENL ANLACRSALS KRGVAHLSIA NDVQERMAGG GRSRRNREGH
MPSRFFEGRL VPREDDILRA ADLLNAGRKV AILAGRGALE AKGLLRETAD LLGAPVAKAL
LGKAVLPDDD PFTTGGIGIL GTVPSQEIMQ QCDTLLIVGS TFPYIEYYPK PHAATGIQID
HDPQRIGLRY PVEVGLVGAA GETLRMLNER LQRKADRTFL EQAQEKTRNW RRELRAMEGD
RSSPLKPQAA VGAFGRRIAA NGIVVTDSGQ NTELAARHVD LGADHMFAVS GALASMASGL
PYAIAAGIAM PARPIYAVVG DGGFAMQLGE FATAVRYEIP LKLLVIRNDM LNQIAWEQMM
FLGNPQFACE LPPIDFAAAA EAMGGRGFTI RSFDEIDGVL DQAFAAEGPV VIQALVDRYE
PLMPPKMPED YARNFRAALP QTPGHEKIEE NLRHSSAGRK VTEEEPQAPH EAAPDANTGD
LPGIP
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