| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4000 |
|---|
| Symbol | |
|---|
| ID | 5319247 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | + |
|---|
| Start bp | 453934 |
|---|
| End bp | 454566 |
|---|
| Gene Length | 633 bp |
|---|
| Protein Length | 210 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640775808 |
|---|
| Product | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase |
|---|
| Protein accession | YP_001312741 |
|---|
| Protein GI | 150376145 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0163] 3-polyprenyl-4-hydroxybenzoate decarboxylase |
|---|
| TIGRFAM ID | [TIGR00421] polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.178925 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGCGG ACCGGGAACA GAGAAAACGG ATCATCGTCG GCATTAGCGG CGCCTCCGGC
GTCATATACG GCATCCGGCT GCTGGAGATC CTGCGCGATC TGGACATCGA GACCCATCTG
GTGATGAGCC GCGCCGCCCA GATCACGCTT GCGATGGAAA CGGACTTCAA GGTGGCCGAG
GTCGAGGCGC TTGCCTGTCA CGTCCACTCG AACAAGGACA TCGGCGCCTC CTGCTCCAGC
GGCTCTTTCC GCACCCTCGG GATGATCGTG GCGCCCTGCT CGGTCAAGAC TCTTTCGGAA
ATCGCGACGG GCATGACATC GGGGCTGCTG TCCCGGGCGG CTGACGTCAC ACTGAAGGAA
CGCCGCCGGC TGGTGCTCAT GCTGCGCGAA ACGCCGCTGC ACCTCGGCCA TATTCGTTCG
ATGGCCCAGG TGACTGAAGC AGGAGCGATC ATCTGCCCGC CCGTTCCGGC CTTCTATGCG
CGTCCGCAGA CGCTGGACGA GATGGTCAAT CATACCGTGG CCCGCGTGCT TGATCTGTTC
GACATCGATA CCGGGCTCGC ACATCGCTGG AGCGGGCGGC GCGCTGTCGT TCTGCCAAAT
CGATTTGAAG ATGCCGACGC GAAGACGAGG TGA
|
|---|
| Protein sequence | MKADREQRKR IIVGISGASG VIYGIRLLEI LRDLDIETHL VMSRAAQITL AMETDFKVAE
VEALACHVHS NKDIGASCSS GSFRTLGMIV APCSVKTLSE IATGMTSGLL SRAADVTLKE
RRRLVLMLRE TPLHLGHIRS MAQVTEAGAI ICPPVPAFYA RPQTLDEMVN HTVARVLDLF
DIDTGLAHRW SGRRAVVLPN RFEDADAKTR
|
|---|
| |