Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_3994 |
Symbol | |
ID | 5319241 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009620 |
Strand | - |
Start bp | 447776 |
End bp | 448453 |
Gene Length | 678 bp |
Protein Length | 225 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640775802 |
Product | TetR family transcriptional regulator |
Protein accession | YP_001312735 |
Protein GI | 150376139 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.75286 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCGAAG AAGAGTTTGC CGAAGACGAG GACGACCAGG AAGCGGCATC AGGCCGCTCC GGGAAACGGG ACGCCCGTCG CGAAGAGTTT CTGCGCGCAG CCACGGAGGT GTTCCTGAGT TCGGGCTTTT CCGGTGCGAG CGTCGACTCG ATCATCGCGA AGGCGGGTGG TTCGAAGCGG ACCATCTACA GCTATTTCGG CAAGAAAGAT CAGCTGTTTA CGACAGTCAT AAAGGAGATC ACCGGCCGGG TAATGGGCCC ATTCCCCGCC GCGAACATTG CCGGTGCCGA CCTCGATACG GTGCTTTACA GGAGCGGAAG CCATTACCTC GACGCAGTCA TGTCACCGGA AGCCCTGCAG CTCTACCGTA TAGTCGTCGG CGAAGGCGCG CGGTTTCCTG GCGTGGCGCG CGCTTTCTTC GAGAACGGTC CCGGCAGGGC CAGTGCAGCT CTTGCAAGTA TCCTCGAGGA AGGGGCGGAC AACTGGGGAA TACCAAAGCG TTCCGCGGCG AAACTGGCGG AGCACTTCAT AGGCATGATC CGCGACGACC TGCACCTGAA GGTCGTGCTT GGGCTTTGCG ATCCGCCGAC GCCTGCGGAA GCTCGCTCGT CGGTTCGCGA TGCCGTCGAC GTTTTTGTGT ACGGCATCCG GAAGACCGAG CTGACGAGGT CACGATGA
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Protein sequence | MAEEEFAEDE DDQEAASGRS GKRDARREEF LRAATEVFLS SGFSGASVDS IIAKAGGSKR TIYSYFGKKD QLFTTVIKEI TGRVMGPFPA ANIAGADLDT VLYRSGSHYL DAVMSPEALQ LYRIVVGEGA RFPGVARAFF ENGPGRASAA LASILEEGAD NWGIPKRSAA KLAEHFIGMI RDDLHLKVVL GLCDPPTPAE ARSSVRDAVD VFVYGIRKTE LTRSR
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