Gene Smed_3945 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3945 
Symbol 
ID5318053 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp394863 
End bp395693 
Gene Length831 bp 
Protein Length276 aa 
Translation table11 
GC content64% 
IMG OID640775755 
ProductS-formylglutathione hydrolase 
Protein accessionYP_001312688 
Protein GI150376092 
COG category[R] General function prediction only 
COG ID[COG0627] Predicted esterase 
TIGRFAM ID[TIGR02821] S-formylglutathione hydrolase 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.897116 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAACTTG TAACGCAAAG CCAATGTTTC GGGGGGACCC AGTCGGTCTA CCGCCACGCC 
TCCGAGGTTT GCGGCGTCGA GATGACATTC GGCCTGTATT TGCCGCCTCA GGCCCGGAAG
CGCTCCGTGC CGCTCCTGTG GTACCTCTCC GGGCTGACAT GCACCCATGA GAATGCAATG
ATCAAGGCGG GCCTGCAGCG GCACGCGGCC GAGCAGGGGC TGGCGCTGAT TTTCCCCGAC
ACCTCGCCGC GCGGCGACGG AGTGGCCGAT GACGAGGCCT ACGATCTTGG ACAGGGCGCC
GGCTTTTACG TTAATGCGAC GCAGAAGCCC TGGTCGCCGC ACTATCGCAT GTATGATTAC
ATCGTCACCG AATTGCCGGC CCTGTTGCAG GCGCAGCTGC CGGTCAACGG CGTCAACGGC
ATTACCGGGC ACTCGATGGG CGGCCATGGT GCCCTCACCA TCGCCTTTCG CAATCCGAAA
CTGTTCCGAT CCGTCTCGGC CTTTGCGCCG ATCGTCAATC CGACCCGGTC CGATTGGGGG
CGCAAGCAGT TTTCCGCCTA TCTCGGCGAC GACGAGGCCG ATTGGGGCAG CTATGACGCC
TGCCTGCTGC TCAGCGAACT CGGCTGGCAC GGCGATATCC TCATCGACCA GGGCGCGGCG
GACCAGTTTC TCACCGAGCT GCAGCCCGAG GCGATGGCCC GGTTGCTGGC GGAGCGTCGG
CAAGCCGGCG TCGTACGGCT GCAGGCGGGA TATGACCACA GTTACTATTT CGTGGCGAGC
TTTGGCGAAG ACCATGTGCG CTGGCATGCA GAGCGGCTGA ACGCCGCGTA A
 
Protein sequence
MELVTQSQCF GGTQSVYRHA SEVCGVEMTF GLYLPPQARK RSVPLLWYLS GLTCTHENAM 
IKAGLQRHAA EQGLALIFPD TSPRGDGVAD DEAYDLGQGA GFYVNATQKP WSPHYRMYDY
IVTELPALLQ AQLPVNGVNG ITGHSMGGHG ALTIAFRNPK LFRSVSAFAP IVNPTRSDWG
RKQFSAYLGD DEADWGSYDA CLLLSELGWH GDILIDQGAA DQFLTELQPE AMARLLAERR
QAGVVRLQAG YDHSYYFVAS FGEDHVRWHA ERLNAA