Gene Smed_3892 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3892 
Symbol 
ID5318686 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp350189 
End bp351307 
Gene Length1119 bp 
Protein Length372 aa 
Translation table11 
GC content65% 
IMG OID640775704 
Producthypothetical protein 
Protein accessionYP_001312637 
Protein GI150376041 
COG category[S] Function unknown 
COG ID[COG4641] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0923789 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCGCC CACTCGACAT CGTCATCCTC GGTCTCTCGC TGTCCTCGTC GTGGGGCAAC 
GGCCACGCGA CGACATACCG GGCTTTGCTT CGTGCCGTTA ACGCCGCCGG CCACAAGGTG
ACGTTTCTCG AACGGGACGT GCCGTGGTAT GCGGACAATC GCGATCTCGC CGTGCCGGAC
TTCTGCGATC TGGTGCTCTA TGACGACACG GACGAACTCA CACAGCGGCA TGCGCGAAAG
CTCGCCGATG CGGATGCCGT CGTCGTCGGC TCCTACGTGC CGGATGGCGT GGACGTCATC
GACGCTGTCG CGGATCTGGT ACCGAAGCGC CTGTGCTTCT ACGACATCGA CACGCCCGTG
ACGCTCGCCA AGCTCGAACG CGGCGACGAG GAATATCTCG CCCGAAGGCA GGTGGCGTTC
TTCGACATCT ACTTTTCCTT CTCAGGCGGC AAGACGCTCG ACAGGCTGCG TGACGAGTTC
GCGGCACGGC GGCCGGTGCC TCTTTATTGT GCCGTCGACC TCGAAGCCTA CCGCAACACA
GGCGCACCGA CGAAGTGGGA TCTCGGCTAC CTCGGCACCT TCAGCCCCGA CAGGCAGCCG
GTGCTCGAAC GCCTGTTGAT CGAGCCGGCG CGCCGCCTGC CGCACATGCG CTTCGCCGTC
GCCGGGCCGA GCTACCCTTC CGACATCCAC TGGCCGCCGA ACGTGGAGCG CATAGAGCAT
CTGCCGCCCG GCGAACATGC TGAATTCTAC AGCCGCCAGC GCTTTACGCT GAACGTGACG
CGCGCCGACA TGGTCGCGGC CGGCTGGTCG CCGAGCGTCC GCCTCTTCGA GGCCGCAGCA
TGCCGCACGC CGATCGTCAG CGACTGGTGG GAGGGCATCG AGAATTTCTT CCCGCCTGGC
GAAGCCGTGG TCATTGCACA GAGCAGCAGC GATGTCGTCA CGGCATTGAC GAGCCCCGAT
GAAGCCCAAC GCGAAGCACT TGCCGATTGC GCTTATCGAC GCGTCGCCGC CGAGCACAGT
TCCGCCGCGC GCGCACGCAG CTTCGTCGAG GCACTCGAAA GCGTCGCCGC CAGAACGGAT
CTCGCAACCC AGCGTGTCGA GCGGCGGCTT CCGGTTTAA
 
Protein sequence
MKRPLDIVIL GLSLSSSWGN GHATTYRALL RAVNAAGHKV TFLERDVPWY ADNRDLAVPD 
FCDLVLYDDT DELTQRHARK LADADAVVVG SYVPDGVDVI DAVADLVPKR LCFYDIDTPV
TLAKLERGDE EYLARRQVAF FDIYFSFSGG KTLDRLRDEF AARRPVPLYC AVDLEAYRNT
GAPTKWDLGY LGTFSPDRQP VLERLLIEPA RRLPHMRFAV AGPSYPSDIH WPPNVERIEH
LPPGEHAEFY SRQRFTLNVT RADMVAAGWS PSVRLFEAAA CRTPIVSDWW EGIENFFPPG
EAVVIAQSSS DVVTALTSPD EAQREALADC AYRRVAAEHS SAARARSFVE ALESVAARTD
LATQRVERRL PV