Gene Smed_3870 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3870 
Symbol 
ID5318869 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp327573 
End bp328610 
Gene Length1038 bp 
Protein Length345 aa 
Translation table11 
GC content68% 
IMG OID640775682 
Productmalate/L-lactate dehydrogenase 
Protein accessionYP_001312615 
Protein GI150376019 
COG category[C] Energy production and conversion 
COG ID[COG2055] Malate/L-lactate dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGAGA CAACCACCCT GACGACCACC GCGCTTCACG AGCGCGTCGA GGCGATCTTC 
CGGAAGGGCG GCCTTAACGT GGTACAGGCG GGCGCTCTCG CCCGGGTGAT CGTTGCCGGC
GAGCGGGATG CCTGCAAGTC GCACGGTATC TACCGGATCG AAGGCGCGCT GCGCACGGTG
AAGGCCGGCA AGGTTAAGCC GGACGCGATA CCGGAAATCA TCGCGCAGGA GGCCTCGGCG
ATCGTCAAGG TGAACGCCGG AGGCGGCTTC GCCAATCCCG CCTTCGAGCT CGGCCTGCCG
GTACTCGCCG AGCGCGCTCG TACGCAGGGC ATCGCGGCGC TCGCCATCAA CGACTGCACG
CATTTTTCCG CGCTTTGGCC GGAAGCGGAG GCGCTCACGG GAGAAGGGCT TGCCGGCCTC
GTCATGTGCC CGAGCTATGC GACGGTCGCG CCGACCGGCG GCAACAAGCC GCTTCTTGGC
ACCAATCCTT TCGCCTTCGG CTGGCCCCGC GCCGGCAGAC CACCCTACGT CTTCGACTTT
GCAACCTCCG TCGCGGCGCG CGGCGAGATC GAGCTGCACC GCCGCGCCGG CAAGGCTCTG
CCCGACGGCT GGGCGATCGA TGCTAAGGGC AATCCCACGA CCGACCCCGA GGCCGCGCTC
GCGGGTGCCA TGCTGCCCTT CGGCGGACAC AAGGGCTCGG CTATCGGTAC GATGATCGAA
CTCCTGGCGG GAATCATGAT CGGCGACCTG ACGAGCCCCG AAGTGCTCGA CTATCTCGGA
ACCACCACGC TCGCGCCGTT CCACGGCGAA TTGATCATCG CCTTCTCGCC GGAGGCTTTC
GCCGCAGGCC GACCAGGAGA CCCCTTTGCC CGCGCCGAGA TGTTGTTCGA GGCGATTGTC
GGCCAGGGCG CCCGCCTGCC TTCGCAACGC CGCTTCGCTG CGCGCGCGAA GTCGGAGGCC
GAAGGCATCA CCCTGACCGC AGCCGAAGTC GAGCAACTCG ATCGGCTCCT TACGCTCGGG
CTCGACGCCG TGGCGTAA
 
Protein sequence
MSETTTLTTT ALHERVEAIF RKGGLNVVQA GALARVIVAG ERDACKSHGI YRIEGALRTV 
KAGKVKPDAI PEIIAQEASA IVKVNAGGGF ANPAFELGLP VLAERARTQG IAALAINDCT
HFSALWPEAE ALTGEGLAGL VMCPSYATVA PTGGNKPLLG TNPFAFGWPR AGRPPYVFDF
ATSVAARGEI ELHRRAGKAL PDGWAIDAKG NPTTDPEAAL AGAMLPFGGH KGSAIGTMIE
LLAGIMIGDL TSPEVLDYLG TTTLAPFHGE LIIAFSPEAF AAGRPGDPFA RAEMLFEAIV
GQGARLPSQR RFAARAKSEA EGITLTAAEV EQLDRLLTLG LDAVA