| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3840 |
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| Symbol | |
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| ID | 5318568 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | + |
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| Start bp | 295376 |
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| End bp | 297889 |
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| Gene Length | 2514 bp |
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| Protein Length | 837 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640775652 |
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| Product | TRAP transporter, 4TM/12TM fusion protein |
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| Protein accession | YP_001312585 |
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| Protein GI | 150375989 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0404123 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGACGGGGC TGATATTGCT CTGCACCGCT GTCGCCTGGT CGCTGTTCCA GCTCTGGTAC
GCGTCCCCAC TGCCCTTCGT CTTCGGTTTC GGCATCCTGA ACGATACCGA AGCCCGCGCC
ATCCATCTCG GTTTTGCGCT GTTCCTGACC TTTCTTGCCT ACCCCGCACT GAGAAGCTCG
CCGCGTGACC GGGTGCCGCT CGCCGACTGG GTGCTGGCGG CACTCGGCGC CTTTGCGGGC
GCCTACCTGT TCATCTTCTA CGGCGATCTG GCCGGACGAC CGGGCCAACC TTCGACACTC
GATCTCGTCA CCGGCACCAT CGGCATCCTG CTCCTGCTGG AGGCCACGCG TCGCGCGCTC
GGCCTGCCAA TGGTGATCGT CGCCGGCGTC TTCATCTTCT ACACCTTTGC CGGCCAGTAC
ATGCCGGACG TTATCCAGCA TCGCGGCGCC TCCCTGGTGA AATTCATCAA TCACCAATGG
CTGACGACGG AGGGCGTGTT CGGCATTGCG CTCGGCGTTT CGACGAGCTT CGTCTTCCTC
TTTGTCCTGT TCGGAACGCT GCTCGAGAAG GCGGGGGCCG GCAACTGGAT GATGCAGATT
TCCATCGCAT TGCTCGGACA CCTGCGCGGC GGCCCCGCCA AGGTGGCCGT TGTCTCCTCG
GCCCTGAACG GCGTCGTCTC CGGCTCGTCG GTGTCCAATG TCGTCTCTGG CGGCATCTTT
ACCATTCCAC TGATGAAACG CACCGGGCTT TCCGGCGTAA AGGCCGGCGC GATCGAGGCC
AGCGCCTCGA TAAACGGTCA GATCATGCCG CCGGTCATGG GCGCCGCCGC ATTTCTCATG
GTCGAATATG TTGGAATCCC CTATTCGGAG ATCGTCAAGC ACGCGTTGCT GCCGGCCGTC
TTCTCCTACA TCGCGCTTCT CTACATGGTG CATCTGGAGT CCGTTAAGCT CGACATGCAA
CCGATCCCCC AGCGTCCGAC TCCGGCGCGC GAGCGGTGGA TCCGCATGGG CCTAGGGCTC
ACCGGCAGCG TCCTTGCAGT CTGCCTTCTC TATTACGGGA TCCTCGGCAT ACGGGCGGCC
TTCGGGGCAA ACGCACCCTT GCTGCTCGCA ATCGGAGGCG CGGCGCTTTA CATCGCAACG
ATCTGGTATT CGTCGCGCTA TCCCGATCTG GAGCTCGACG ACCCCAACGC GCCGATACTG
GAGCTGCCGC GGGCATGGGA CGTAACGCGA ACCGGCCTCG ACTTCCTCAT TCCGATCGCC
GTCCTGCTCT GGTGCCTCAT GGTCGAGCAG CTCTCGCCCG GGCTTTCCGC CTTTTGGGCC
ACCGTGACGA TCCTCGCCAT CGTCGCCACC CGCAAGCCGC TGATGGCGAT CTTCCGCAAG
GAGGATTTCG CAAGCTCCGT CGGCGCCGCT GCATGGGACC TCGTAGACGG CCTGGCGCTT
GGCGCGCGCA ACATGATCGG CATCGCCGTC GCCACGGCGA CTGCCGGCAT CGTCGTCGGG
ACGATCACGC TGACAGGCCT CGGCCTGATG ATGACCGAGC TGGTCGAATT CATCTCCGGC
GGCAACGTCA TCATGATGCT TATTCTCATC GCCGCAATCA GCCTTGTGCT GGGCATGGGG
ATTCCCACCA CCGCCAACTA CATTCTGGTA GCCACCCTGA TGGCGCCGGT CGTCGTCGAG
CTCGGCTCGC AGGCGGGCCT CGCCATTCCG CTGATCGCGG TGCATCTCTT CGTCTTCTAT
TTCGGCATCA TGGCCGATAT CACGCCGCCG GTGGGGCTGG CCTCATTTGC CGCAGCTGCA
ATTTCCAAGG AAGACCCCAT CGCGACCGGT TTCCAGGGCG CGCTCTATTC GCTGCGCACC
GCGATCCTGC CGTTCGTCTT CATATTCAAT CCGGCGATCC TGCTGATCGG CGTCGATACC
TGGGCGCACA CGATCTGGGT TGCCGCCATC TCGCTCGCCG CTATCCTGCT CTTCTCGGCC
GCGACGATGA ACTGGTTCGT GACGAAGAGC CGCTTGTGGG AGAGCGCGGT CCTGCTTCTC
GCCTGCTTCT CGCTGTTCCG GCCGGACTGG TGGGTCAATC AGATCTCGCC GCCTTACGAG
GAATTGCCGG CTTCCGAGTT CCTGAGGACG GTGCAGGAGG CTCCCGCAAA AGCTCGAATC
AACTTCGTGG TTCAAGGCAT CGACCTTATG GGTGACGACG TTCGCAAGAC CGTCAACGTG
CCGCTCGGCG AACCCGGCGA ACCGCTGCAG CGTCTGCGGG CGATCGGCCT CACGGTCACA
CCGGCGGGCG ACAGTTTGAT GATCAGCAAT GTCGCCTTCG GATCCTATGC CAAGCGCATC
GGTCTCGATG TCGGCTATGA CGTCGTCGCA GTGCTGAAGA AGGCCGATCA ACCCTCGACC
GCTATCCCGG TGAGCATCGC GCTGATTCTG ACTGCAGGCA TTGCCGGCCT GCAGTTCGCA
CGCAAGAGGG CCGATCGCAG CGGAGCCAGC CTGCGGGGAA CCGCACGCAA ATAA
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| Protein sequence | MTGLILLCTA VAWSLFQLWY ASPLPFVFGF GILNDTEARA IHLGFALFLT FLAYPALRSS
PRDRVPLADW VLAALGAFAG AYLFIFYGDL AGRPGQPSTL DLVTGTIGIL LLLEATRRAL
GLPMVIVAGV FIFYTFAGQY MPDVIQHRGA SLVKFINHQW LTTEGVFGIA LGVSTSFVFL
FVLFGTLLEK AGAGNWMMQI SIALLGHLRG GPAKVAVVSS ALNGVVSGSS VSNVVSGGIF
TIPLMKRTGL SGVKAGAIEA SASINGQIMP PVMGAAAFLM VEYVGIPYSE IVKHALLPAV
FSYIALLYMV HLESVKLDMQ PIPQRPTPAR ERWIRMGLGL TGSVLAVCLL YYGILGIRAA
FGANAPLLLA IGGAALYIAT IWYSSRYPDL ELDDPNAPIL ELPRAWDVTR TGLDFLIPIA
VLLWCLMVEQ LSPGLSAFWA TVTILAIVAT RKPLMAIFRK EDFASSVGAA AWDLVDGLAL
GARNMIGIAV ATATAGIVVG TITLTGLGLM MTELVEFISG GNVIMMLILI AAISLVLGMG
IPTTANYILV ATLMAPVVVE LGSQAGLAIP LIAVHLFVFY FGIMADITPP VGLASFAAAA
ISKEDPIATG FQGALYSLRT AILPFVFIFN PAILLIGVDT WAHTIWVAAI SLAAILLFSA
ATMNWFVTKS RLWESAVLLL ACFSLFRPDW WVNQISPPYE ELPASEFLRT VQEAPAKARI
NFVVQGIDLM GDDVRKTVNV PLGEPGEPLQ RLRAIGLTVT PAGDSLMISN VAFGSYAKRI
GLDVGYDVVA VLKKADQPST AIPVSIALIL TAGIAGLQFA RKRADRSGAS LRGTARK
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