| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3834 |
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| Symbol | |
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| ID | 5318542 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | - |
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| Start bp | 289638 |
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| End bp | 290918 |
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| Gene Length | 1281 bp |
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| Protein Length | 426 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640775646 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001312579 |
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| Protein GI | 150375983 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0563327 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGACGC TCTTTGGGGG CTGGTTTGCC CTTCTGGTCG CCGGTATGCC GGTCGGCTTT
ACGCTGATCG TGGCGGCGCT TGCCTATATG CTCTGGCAGG GAACGGGCCT GAACTTTGCC
GGCCAGCGCA TGATTGCCGG CCTCAACAGT TTTCCGCTGC TTGCCGTTCC CTTCTTCATT
CTCACCGCGC AATTGATGAA TCTTTCGGGC GTGACCGAGC GCATATTCGC CTTCGCCAAG
GCTCTGGTCG GGCATGTCAG GGGCGGGCTC GGCCATGTAA ACATCATGGC GAGCGTAATG
TTCTCCGGCA TGTCCGGTTC GGCAGTCGCC GATGCGGCGG GCCTCGGCCA GCTTGAGATC
AAGGCGATGC GTGACGCCGG CTATGACGAG CAGTTTTCCG GTTCGGTGAC CGCCGCATCG
GCGATCATAG GTCCGCTGAT TCCACCCTCC ATTCCCCTCG TGGTTTATGG GGTGATCGCC
AATACCTCGA TAGGCGGCCT TTTCCTGGGC GGCATCGTGC CGGGCCTCCT CTGCGCAATC
TCGCTGATGG TCATGGTTTA TGTGATCGCC TGGCGCCGGA ACTACCCGAC CGAAGAGCGC
TCCAGCCTTC GCCGGATCTG GTCCACCTTC TGGCGTGCGC TGCTTCCGCT CATTACCCCG
TTCATCATTA TCGGCGGCAT CTTTGCGGGG ATATTCTCGC CGACCGAGGC CGCGGTGGTT
GCAGCCAGCT ATGCTCTCTT CCTCGGGGTC GTGGTCTACC GTGAAATTAC CTTCGCCAAA
CTGGTGATTG TCTTGCGTGA GACCGTCAGC CATACGGCCG CCGTCGGCCT CCTCATCATG
GGGGTGTCGC TGTTCGGCTA TGTGATCGCA CGGGAGCAGG TGCCTCAGCA CGTCGCCGCG
TTCTTCCTTG CGTATGCCGA TGACCCGTTG ACCTTTCTGA TCCTGGTCAA TCTCATGCTT
CTCGCGCTCG GAACCTTCAT AGAGGCGCTC GCCATCCTGC TTCTCATCGT GCCGGTACTG
GTGCCGACCG CGCTTCAGTT CGGGGTGGAT CCCGTCCATT TCGGTGTCAT GGTCGTGTTC
AACCTGATGA TCGGCATTCT GACGCCGCCT ATGGGTGTGG CGCTTTTCGT CGTGTCCAAG
GTCGCCGATA TTCCCTTCGG CCTGCTTGCA CGCGGCATCC TGCCTCTGCT CGTTCCGCTC
GTCCTCGTCC TGGTACTGAT CACCCTGTTC CCCGCGCTCG TCACCTTCAT ACCCGACCAG
ATGCTCGGAG CTGCCCGATG A
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| Protein sequence | MTTLFGGWFA LLVAGMPVGF TLIVAALAYM LWQGTGLNFA GQRMIAGLNS FPLLAVPFFI
LTAQLMNLSG VTERIFAFAK ALVGHVRGGL GHVNIMASVM FSGMSGSAVA DAAGLGQLEI
KAMRDAGYDE QFSGSVTAAS AIIGPLIPPS IPLVVYGVIA NTSIGGLFLG GIVPGLLCAI
SLMVMVYVIA WRRNYPTEER SSLRRIWSTF WRALLPLITP FIIIGGIFAG IFSPTEAAVV
AASYALFLGV VVYREITFAK LVIVLRETVS HTAAVGLLIM GVSLFGYVIA REQVPQHVAA
FFLAYADDPL TFLILVNLML LALGTFIEAL AILLLIVPVL VPTALQFGVD PVHFGVMVVF
NLMIGILTPP MGVALFVVSK VADIPFGLLA RGILPLLVPL VLVLVLITLF PALVTFIPDQ
MLGAAR
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