| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3816 |
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| Symbol | |
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| ID | 5318370 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | + |
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| Start bp | 269151 |
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| End bp | 270416 |
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| Gene Length | 1266 bp |
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| Protein Length | 421 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640775628 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001312561 |
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| Protein GI | 150375965 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCACCA CCGCCGCCTT CCTTGCCTTC ATGCTCGTCG GCGTTCCGAT AGGGGTCTGC
CTTTGCCTCG GCAGCATCGT CTACATTTTG GCATCTGGGA ATCCCCTGCT CTTCCAGAGC
TTTCCGACGC AACTTTTCGG CGGCGTCGAC AATTACGGCC TGATTTCCAT TCCGCTCTTC
GTGCTGATCG GCGAGATCAT GAACGGTGGC GGAATCACGC GCCGTATAAT CGACATGACC
ATGGCTTTTG TCGGCGCCAT GCGCGGCGGC CTCGCCTATG TCAACCTGCT GGCGAACATG
TTCGTTGCCT CCATTCTCGG TTCGGCGACG GCGCAGGTCG CGGTCATGGC GCAGATGATG
GTGCCGGAGA TGGAAAAGAA GGGCTATGAC AAGACCTTCG CCGCCGGAAT TACGGCCTAT
GCGGGCATGC TCGGCCCCAT CATTCCCCCG TCCATCATGT TCGTCGTCTA CAGCGTGCTG
GCGCAGGTTC CGGTCAGCGA TATGCTGGCC GCCGGAATTG TGCCCGGCGT CCTGCTGACG
GTAGCATTCT GCCTCGTCAT CGCGGCGATG GGACTCGTCT ACAACTATCC GCGCGGCGAA
CGTATGAAGC TCAAGGATCG TGTCCGGATC GTGCTGGACG CGTTGCCGAC GCTTCTCATA
CCCTTCGTCA TCGTCGGCTC CGTTCTGTCC GGCCTTGCCA ATGCGACGGA GGCCGCTGCG
GTCGGAGCGG TCGCAGCAGT GCTCGTCGGC CGCTTCTGGA TCGGCGAACT CAGATTCGCC
GACCTTCCGC GGATGATGCT GCGGGCCGGC ATCTACTCGG CGGTGGTCCT CTTCCTCGTG
GCGGCGGCCG CGGTCTTTTC CTGGGTACTC GTCTACGGAA TGGTGCCGCA GCAGGTAGCC
GGCTGGGTCC AGACCGTCGC ATCGGATCCG GTCACCTTCA TGCTGCTCGT CAATATCATC
CTGCTCATCA TCGGCACGGT GATCGACGGC GCGCCCGGTC TCATCATGAC GGTGCCCATC
CTCCTGCCGA TCGCCACCGA GGTTTACGGC ATCGACCCCA TCCATTTCGG CGTCGTCGTC
GTCGTCAACC TCGTTCTCGG CTTCCTCTCG CCGCCCGTCG GACTTTGCTT CTTCGTCGCC
GCAGCGGTCA CCGGTGCCAA GCCCGGCAAG ATGTTCCTGG TCACACTGCC GTTCTTCTTC
GTTTCCTGCC TAATGCTCGT GCTTCTCTCG CTCATTCCGT CACTTTCCAC CTTCTTCGTC
CGGTAA
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| Protein sequence | MLTTAAFLAF MLVGVPIGVC LCLGSIVYIL ASGNPLLFQS FPTQLFGGVD NYGLISIPLF
VLIGEIMNGG GITRRIIDMT MAFVGAMRGG LAYVNLLANM FVASILGSAT AQVAVMAQMM
VPEMEKKGYD KTFAAGITAY AGMLGPIIPP SIMFVVYSVL AQVPVSDMLA AGIVPGVLLT
VAFCLVIAAM GLVYNYPRGE RMKLKDRVRI VLDALPTLLI PFVIVGSVLS GLANATEAAA
VGAVAAVLVG RFWIGELRFA DLPRMMLRAG IYSAVVLFLV AAAAVFSWVL VYGMVPQQVA
GWVQTVASDP VTFMLLVNII LLIIGTVIDG APGLIMTVPI LLPIATEVYG IDPIHFGVVV
VVNLVLGFLS PPVGLCFFVA AAVTGAKPGK MFLVTLPFFF VSCLMLVLLS LIPSLSTFFV
R
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