Gene Smed_3795 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3795 
Symbol 
ID5317996 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp244078 
End bp245910 
Gene Length1833 bp 
Protein Length610 aa 
Translation table11 
GC content60% 
IMG OID640775608 
Producthistidine kinase 
Protein accessionYP_001312541 
Protein GI150375945 
COG category[T] Signal transduction mechanisms 
COG ID[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCTGCGAA TTCGACCGCA AACGGTCATC GTTACAATGT TCGCGCTGAT AGCGGGAACA 
TTGGTCTGCC ATGCCACCGA GCCAAGACGC GTACTTCTGA TCTATGAAAG CGAAAGCACC
CTGGTTGCCG CCATGCAATT GGCGTCCGGT TTCCAGGAAT ACATGGAAGC GAACGACCCC
GGGCATGTCG AATATTATAC GGAGTATCTC GACACCCTTC GTTTCTCATC GCCGGAGCAC
TCGCTCCGTC TCGCAGGCTT TCTGGAGGCC AAATACCGGC AGTTGAATCT GGATGTCGTG
GTGGCGGCCG GCCCCGGCGC GCTGCGTTTC GTTCTGGAGA CGCGTGAGCG TTTTGCCAAC
GATGTTCCCG TTGTCTTCGG TGCAGTCACC GAAAGTTCCG TTACCGGCAA CCTGCCGCCC
GACGTCAAGG GCGTCGTCAG CCGTTTTGAC GTGGGCAAGA CAGTCCAGCT TGCCAGCCGG
CTTCAACCGA GGGCGCGCAA GGTGGTCGTC ATGTACGGCT CGGCGCCCTT CGACCGCAAA
TGGGGCGACA CAGCGACCGC CGTCCTGGGG GAGCGCTACG CCGGCCTTGA CGTCGAATAT
GTTTCCGGCC TTTCGCTCGA TGGTTTCCGC AAGACGGCCG CGGAACTGCC CTCCGATGCG
GCGCTCGTGA TTCTGACCGT CTTTGAAGAT GCGGAGGGAA TGAAATTTGT GCCGCGGGAC
GCGGCAAGGG CGATCGCGGC AGCGTCTGGC GCGCCTGTCT ATGGTGTGTA CAGTTCCTAT
TTAGGCTTCA GAGTACTGGG CGGCTATGTG GGCACGTTTC CATCCATCGG CGCTCAAATG
GCCGCTCTTT CCCTGGATGT CATGCGAGGC GACCTTTCGG CTCCCCGGAC CACGCCCGCG
CAGGAGACGG CGCTTGTCGA CTGGCGCGAA GTCCAGCGCC TGGGAATTGA CGACGTATTG
ATACCCGAAG ATGCAGAAAT CCTGAGTTAT GCGCCAAGCG TTTGGGAGCG TTACCGACTG
CCCATCAGCG CGGCACTCCT GGTGATCGCA GCGCAAATGC TCACCATTGC CGCGCTCGTC
TATCAGAACC GGCGGGGCCG CAGGCTCGAA GCGACCCTCG CCTCCGAACG TGTGGAGCTT
GCCCACCTCT CGAGGAGATC GCAACTGGGA GAGCTTTCCG GGGCTTTTGC GCATGAACTG
ACGCAGCCGC TGACTTCTAT TCTCGCCAAT GCCGAGGCAG GGCAGAGGCT CGCCACCGAG
ACCGCTCCGG ACATGAACGA AATCCGCGCG ATCTTCGATG ACATCGTGGC GGACGACCGG
CGGGCGTCGT CGGTCATTTC GCAACTGCGC AGCATGATGC TGAAGGGCGA AGCCTCGCAG
GAAATCCTCG ACCTGAACGA CGCCGTGCGC CAGACCGTTG CCCTGGCTCA CGCAGAGATG
TTGGCGCGCC GCACCGAGGT GGAAGTCAAA AACGAATTGG CGAGCGTCCG CGTCAAGGCG
AACCTCGTGC AGCTCCAGCA GGTGATCCTG AATTTGCTCG TGAATGCGGC CGACGCCATG
GCAGACATCC CGCCCAAGCA ACGAAAGGTT GAAATCGCGG TCGACAGAAG CAACAATGGA
TATTGTGAAT TGTCGGTTGC GGACATGGGG CCTGGTATAC CGGCGGGAAT GCAGGGCGAG
GTGTTCAAGC CTTTTGTGAG CTCGAAGAAG GGCGGTCTTG GTCTGGGCCT TGCAATCTGC
CGAAGCATTG TTGAGGCGCA GGGAGGGAAA TTGTTCTTTG ACGATGGTGT GAAGCGGGGA
GCGCGGGCCA TCATTATTCT GCCGTCAGCC TAG
 
Protein sequence
MLRIRPQTVI VTMFALIAGT LVCHATEPRR VLLIYESEST LVAAMQLASG FQEYMEANDP 
GHVEYYTEYL DTLRFSSPEH SLRLAGFLEA KYRQLNLDVV VAAGPGALRF VLETRERFAN
DVPVVFGAVT ESSVTGNLPP DVKGVVSRFD VGKTVQLASR LQPRARKVVV MYGSAPFDRK
WGDTATAVLG ERYAGLDVEY VSGLSLDGFR KTAAELPSDA ALVILTVFED AEGMKFVPRD
AARAIAAASG APVYGVYSSY LGFRVLGGYV GTFPSIGAQM AALSLDVMRG DLSAPRTTPA
QETALVDWRE VQRLGIDDVL IPEDAEILSY APSVWERYRL PISAALLVIA AQMLTIAALV
YQNRRGRRLE ATLASERVEL AHLSRRSQLG ELSGAFAHEL TQPLTSILAN AEAGQRLATE
TAPDMNEIRA IFDDIVADDR RASSVISQLR SMMLKGEASQ EILDLNDAVR QTVALAHAEM
LARRTEVEVK NELASVRVKA NLVQLQQVIL NLLVNAADAM ADIPPKQRKV EIAVDRSNNG
YCELSVADMG PGIPAGMQGE VFKPFVSSKK GGLGLGLAIC RSIVEAQGGK LFFDDGVKRG
ARAIIILPSA