| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3786 |
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| Symbol | |
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| ID | 5317954 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | - |
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| Start bp | 233292 |
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| End bp | 235013 |
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| Gene Length | 1722 bp |
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| Protein Length | 573 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640775599 |
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| Product | outer membrane autotransporter |
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| Protein accession | YP_001312532 |
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| Protein GI | 150375936 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.968521 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGGTCG CCAAGGTTCG GAAGTGCTTC AGCACGGTGC TGAGCGGGGC ACTGCTTGCG
GGGCTCTTTT GCATTGTGGG GAGCGGGGAG GCATCTGCCG CGAACTGCAG TGCAGGCGGC
GGTTTGGCCT ATCTCGGGAA CACCCGAGGG GCAGCCCGCT CGGTCTGGCT TTCCGGGACC
AGCGCCGGAT CGTTCGGACT TGAGGCTGCC CAGGGCAATC AGATGGTCGA TACGTGGAGC
AAAAGCAAAC GTGGCCTCCA TCTGTCGCTC TCACCGGTCG TTTCGAACGG GAACGGCGGT
ACGCACAAGC TTCTTGACCT ATCGGGAGGG AAGCCCTGCC TGCTCGACAC GCAGAACCAG
GTGCGCGATT TCATTCCGCC GGACTTCACC TGGCCCCAGG GGCGGCCCGA CATCGGTCCG
ATTCGGTTCT TCGATTTCGA CTTGCCCGAG GGGCGCCCTG ACACCGGCCC GATCCGTGTC
TTCCCCGATT TCGATCGGCC GGCCGGACGG CCCGACACCG GCCCCATTCG CGTTTTCCCG
GGCTTCGATC GGCCTGACGG GCGGCCCGAC ACCGAACCGG TTCGGGTCTT CCCCGGTTTC
GATCGGCCGG ACGAACGACC CGACAACGAT CTTCCGCGCA TTCCGCCGGA CCGTCCCGAT
GGGCGGCCCG ACAATGACCT GCCGCGTGTG TTTCCCGGGT TCGACCCACC TTCACCCTCA
CCGAATCCCA CGGCGGTTCG GGGCGGGCGT GTGGTCGGGG CTCGGACAGC GCAGAACTGC
ATCGACCCCC GTTCCGTGGG CTCCGATCAA AGGCGCGACG TGCCGATCTG CCCTGAGTTC
GTTGCGGAAG AGGCAGCGAC GCAAGGCGCC GGCCAGTCCC GCGGTGTGCC GCTGACGCCC
GGCCGCGATC TGCCCGCGCC CTCGCTCTGG AATTTCTGGT CCGACATTCG GTTCACGGAT
ATATCAGACG AACGTTACGA CCGAGACAGC GACACCTTCG CCCGCACACT TGACATGGGC
CTCGATCGCC GGATCACCGA CGACCTTGTG GTCGGCATGT CATTTTCTCT GCAGGACAGT
TCGACGCATG CGTTCCACGA CTCGCTCGAC ATCGATTCGG ACGGGTTCAG CTTCGGTCCT
TACGCGGCCT ATCGCCTGTC GAAGCACTGG GCCATCGACG CTTCCCTGAC CTATGGACGC
TACAACAACG ATGTCGAACT GAGCGTGCTC AGCGGCAAGT ATGATTCCGA GCGTTTTGCC
GGTGAGATCT CGCTCAACGG CCAATACAAA TTCGACGCCT ACTACGTCCG TCCGAAAGCA
TCCGTAACCC TGTCCCATGT CAAAAGCGAT GCATACGGCC TCTCCGGAAG TCTTTTCAAT
TTCCCGGTGA GTGTTTCGCT TCCGGGCGAC AGCTACAATT ATGGCGTGCT CGACATGTCG
ACCGAAGTCA GCAGGTTCTT CCGCCTGCCG GACGGGCAGC CGTTCCTGGT CTTCGCGGAG
CTTGGCGCGC AATATGAATT CGAGCGGCCG AACGACGGGA AGATTCTGAC GGGCGACCTG
TCGGAAGTCT CTCCCTCGCC CTGGGCGTTT TCACTGCGCT CGGGATTGAG AATGCTGCTC
AACGAAAACC TCCAGATCGA AGCGACGGGA GGTTATCTAA GCCTCGGTCA GGATGATCTC
GACGTATGGG AGGGCAAACT TCACGTGTCC TGGAGCTTCT AA
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| Protein sequence | MVVAKVRKCF STVLSGALLA GLFCIVGSGE ASAANCSAGG GLAYLGNTRG AARSVWLSGT
SAGSFGLEAA QGNQMVDTWS KSKRGLHLSL SPVVSNGNGG THKLLDLSGG KPCLLDTQNQ
VRDFIPPDFT WPQGRPDIGP IRFFDFDLPE GRPDTGPIRV FPDFDRPAGR PDTGPIRVFP
GFDRPDGRPD TEPVRVFPGF DRPDERPDND LPRIPPDRPD GRPDNDLPRV FPGFDPPSPS
PNPTAVRGGR VVGARTAQNC IDPRSVGSDQ RRDVPICPEF VAEEAATQGA GQSRGVPLTP
GRDLPAPSLW NFWSDIRFTD ISDERYDRDS DTFARTLDMG LDRRITDDLV VGMSFSLQDS
STHAFHDSLD IDSDGFSFGP YAAYRLSKHW AIDASLTYGR YNNDVELSVL SGKYDSERFA
GEISLNGQYK FDAYYVRPKA SVTLSHVKSD AYGLSGSLFN FPVSVSLPGD SYNYGVLDMS
TEVSRFFRLP DGQPFLVFAE LGAQYEFERP NDGKILTGDL SEVSPSPWAF SLRSGLRMLL
NENLQIEATG GYLSLGQDDL DVWEGKLHVS WSF
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