| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3774 |
|---|
| Symbol | |
|---|
| ID | 5318222 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | + |
|---|
| Start bp | 219853 |
|---|
| End bp | 223005 |
|---|
| Gene Length | 3153 bp |
|---|
| Protein Length | 1050 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640775587 |
|---|
| Product | acriflavin resistance protein |
|---|
| Protein accession | YP_001312520 |
|---|
| Protein GI | 150375924 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.693497 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGCCT CCACAGAGGA CAGGAAACCG TTCAATCTTT CGCGCTGGGC GATCGGGCAT
CCGAGCATCG CGCGCTTCCT CCTGGCGCTG ATCATCATCA CAGGCGCCCT CGGGCTCCTG
CGCATGGGAC AACGCGAGGA TCCGGAATTC ACGTTCCGCG TCATGGTGGT GCAAGCCGTA
TGGCCAGGAG CATCCATCCA GGAAATGGAA GACCAGGTCG TCAACAAGAT AGAGCGCAAG
CTGCAGGAAA CGCCGCACCT CGATTTCGTC CGCTCCTATA CGCGCGCCGG CAGCGCCATC
ATCACCGTCC AGATCGAGGG CGACACCAAC GCAGACGAGG TCGCCGACGC GTTCTATCAG
GTGCGCAAGA AGGTGGGCGA CATAGCCAAC GAGCTGCCCG AAGGCGTGCT CGGCCCCTAT
TTCAACGACG AATTCGGTGA CACCTTCATC ACCTTGCATT CGATCAGCGG CGACGGCTTC
AGCTATCCGG AGCTGAGGCG CTTCGCGATC GAAGGCCGTG ACATGCTGCT GACGACGCCA
GGTGTCGAGA AGGTGGTGAT CCTCGGCGAC CAGCCGGAGA AGATTTTCAT CGACGTCTCC
TCCAAGGCGC TCGCCGAACG CGGCCTGACG CTCAACGACC TGCGCGATGC CATTGCCGGC
CAGAACAATG TCGATCACGC GGGTTCCATC GATACGGGCA CGCGCTCGGT TCGCATCTCG
GTTGAAGGCG GCGTCACCAA GGCCGAAGAC ATCCGTGAGC TTCGGCTAAG GGCGGGAGAA
AGGACCATTC GGCTCGGCGA CATCGCGACG GTTACTTCCG GTCTGGAAGA CCCCTATTCC
CGGAAATTCC GTTTCAACGG CCACGACAGC GTCCAGATCG GCGTCGTCAT GGCGAAGGGT
TTCAACGTCA CGGACGTCGG CAAGGCGGTC GAGGCTACCT ACGATCGATT CGAGTCCGCC
CTTCCCTATG GCGTGTCGGT CGATCAGGTC TCCAATCAGC CGGAGGTCGT CACCGAAGCA
ATAAGCGAAT TCAGCCACGC GCTTGTCGAA GCGCTGATCA TCGTCCTCGT CGTCTCCTTC
CTGTCGATCG GCTGGCGCTC CGGTCTCGTG ATCGCGATCG CCATTCCGCT CGTGCTCGCA
GCCACTTTTG CGATCATGTA CGAACTCGGC ATCGACCTGC AGCGCATCTC GCTCGGAGCT
CTGATCATCG CTCTCGGCCT GCTCGTCGAC GACGCCATGA TTGTGGTCGA GATGATGGAG
CGAAAACTCG AAGAAGGGCT GGAAAAGATC GATGCGGCGA GCTTCGCCTA TTCCTCGACC
GCTTTTCCCA TGCTGACCGG CACCCTGATC ACCACCGCCG GCTTTATCCC CGTCGGCTTC
GCGCAATCGA CCGCCGGCGA ATATGTCCGT TCGCTCTTCT ATGTCGTCGG TATTGCCCTT
GTGGTCTCCT GGTTTGTGGC CGTCTACTTC ACTCCTTGGC TCGGCTACAT GATCCTGAAG
CAGCGCCACC ACGCCGGCAC CCATCACGAC GTCTTCGATA CGCGCTTCTA TCGTCGCCTG
AGGTCAACCG TCGGCTGGGC AGTGCGCCAC CGCATCACTG TTCTCCTGAT GACGCTCGCC
ATTTTCATGA CGAGCCTCTG GGGGTTCCAG TTCATTCCGA AGAACTTCTT CCCGCAATCC
TCGCGACCCG AAATCCTGGT CGACCTCTGG CTGCCAGAAG GAACGAGCAT CAAGGAAGTG
GAAAAGCAGG CAAAGGCGCT CGAGCAACGA TTGATGGACG ATAAGGACAA GCGCTTCATC
GCCACCTATA TCGGAGAAGG CGCGCCGCGC TTCTTCCTGC CCCTCGACCA GCAGCTTCGC
AACCCGAACT TCGCGCAGCT CCTCGTCATG GCGAAGGACG AACCAGCCCG CGAGAGGCTG
ATCGGCAAGT TGCGAACGGT GCTTGCCGAG GAATTCCCTT CGATCCGTAC CAAAGTCGAC
CGATTGTTCC TGGGACCGCC GACCGGCTGG CCGGTGCAGA TGCGGGTGAT GGGGCCCGAC
CGCGAAGAAG TGCGCCGCAT CGCCAACGAA GTGAAGGCGA AATTTCGGGA AAATCCATTG
CTCGGCGCCA TTCATGATGA CTGGCTGGAG CCTGTGCCGG CGATGAAGCT TGTGATCGAC
CAGGACCGCG CCCGTGCCCT CGGCATCACC TCGCAACGTA TCCGCCAGAT GCTGCAGGCG
GCAATGTCCG GCGTTCCGCT GGACAGCTTC CGGGACGGAG AAGAGGCGGT CTCGATCGTG
GCGCGAGAGC CCGGCGGCAA TCGCCATCTG CTCTCCGCGG TCCAGTCGGT GTATGTGCCC
ACCGACTTCG GTGGCTTCGT CCCCGTATCG CAGGTCGCCA AGGTCGTGCC CGTGATGGAA
CAGGGGGTCG AGTGGCGGCG CGACCGGCTC CCCACAATCA CCGTGCGCGC AACGCTCCCC
GACGGCGTGC AGTCGAACGA CGTCGCGATG AAGCTCTTCG ACGAACTCAG GGGACTGAGA
GACAGTCTCC CGCCGGCCTA CAAGGTGGAG ATCCAGGGTG GCGCCGAGGA CAGTGCCGAA
AGCCAGGCCT CGATCGCGGC CAAGGCGCCG ATCATGCTGG TGGTCATCGT CATCCTTCTG
ATGGTGCAGC TCCAGCACTT CGGCAAGGCG ATGCTGGTGC TCGCGACCGG TCCGCTCGGG
ATCATCGGCG CCGCAGCTGC GCTGCTCATC AGCGGAGCGC CCTTCGGCTT CGTCGCCATC
CTCGGCGTTA TCGCGCTGCT CGGCATCATC ATCCGCAACT CGATCATTCT CGTGGACCAG
ATCGACCAGG ATATCGCGGC CGGGATGGAG CGTTACGAGG CGATCATCGG TGCGGCGGTG
CGCCGCTTCC GGCCTATCAC GCTCACCGCG CTCACCGCGG TGCTGGCATT GATCCCGATC
TCTCGCGGCG TGTTCTGGGG ACCGCTCGCC TATGCGATGA TGGGCGGTAT CCTGGTGGCA
ACCGTTTTGA CGATCGTCGT GCTGCCGGCC GCCTATGCGC TCTTCTTCGG AAAGGAACCG
AAAGCGCGCA AGACGGCCCC GGGGCCGGCG GCCGCGCAAG GAGATGCCGA CGAAGACTCC
ACGCCCTATC CGGCGCCGCT GGCGGCGGAA TGA
|
|---|
| Protein sequence | MQASTEDRKP FNLSRWAIGH PSIARFLLAL IIITGALGLL RMGQREDPEF TFRVMVVQAV
WPGASIQEME DQVVNKIERK LQETPHLDFV RSYTRAGSAI ITVQIEGDTN ADEVADAFYQ
VRKKVGDIAN ELPEGVLGPY FNDEFGDTFI TLHSISGDGF SYPELRRFAI EGRDMLLTTP
GVEKVVILGD QPEKIFIDVS SKALAERGLT LNDLRDAIAG QNNVDHAGSI DTGTRSVRIS
VEGGVTKAED IRELRLRAGE RTIRLGDIAT VTSGLEDPYS RKFRFNGHDS VQIGVVMAKG
FNVTDVGKAV EATYDRFESA LPYGVSVDQV SNQPEVVTEA ISEFSHALVE ALIIVLVVSF
LSIGWRSGLV IAIAIPLVLA ATFAIMYELG IDLQRISLGA LIIALGLLVD DAMIVVEMME
RKLEEGLEKI DAASFAYSST AFPMLTGTLI TTAGFIPVGF AQSTAGEYVR SLFYVVGIAL
VVSWFVAVYF TPWLGYMILK QRHHAGTHHD VFDTRFYRRL RSTVGWAVRH RITVLLMTLA
IFMTSLWGFQ FIPKNFFPQS SRPEILVDLW LPEGTSIKEV EKQAKALEQR LMDDKDKRFI
ATYIGEGAPR FFLPLDQQLR NPNFAQLLVM AKDEPARERL IGKLRTVLAE EFPSIRTKVD
RLFLGPPTGW PVQMRVMGPD REEVRRIANE VKAKFRENPL LGAIHDDWLE PVPAMKLVID
QDRARALGIT SQRIRQMLQA AMSGVPLDSF RDGEEAVSIV AREPGGNRHL LSAVQSVYVP
TDFGGFVPVS QVAKVVPVME QGVEWRRDRL PTITVRATLP DGVQSNDVAM KLFDELRGLR
DSLPPAYKVE IQGGAEDSAE SQASIAAKAP IMLVVIVILL MVQLQHFGKA MLVLATGPLG
IIGAAAALLI SGAPFGFVAI LGVIALLGII IRNSIILVDQ IDQDIAAGME RYEAIIGAAV
RRFRPITLTA LTAVLALIPI SRGVFWGPLA YAMMGGILVA TVLTIVVLPA AYALFFGKEP
KARKTAPGPA AAQGDADEDS TPYPAPLAAE
|
|---|
| |