| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3768 |
|---|
| Symbol | |
|---|
| ID | 5319060 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | - |
|---|
| Start bp | 213668 |
|---|
| End bp | 215212 |
|---|
| Gene Length | 1545 bp |
|---|
| Protein Length | 514 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640775581 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001312514 |
|---|
| Protein GI | 150375918 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1129] ABC-type sugar transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGCCC GTGACGACGA TGATTGCATC CTGCGCCTCG AAGACGTGAC GAAGGTCTAC
TCGGGCATCG TTGCTGTACG CCATGCGGAT CTTTCTCTCC GGCGCGGCGC CGTCAACGTG
CTCGTCGGCG AAAATGGTGC CGGCAAGTCC ACGCTGATGC GGATCATCGC GGGCGTCGAG
AAGCCGTCAC TCGGCCGCAT CCTGCTCGAC GGCAAGGAGG TGGAATTTCA CTCGCCGGCC
GACGCCCAGC GCCATGGTAT CGGCATGGTC TTCCAGGAGC TCAATCTTTT CGGCAATCTC
TCGGTTGCCG AGAACATCTT CGCGACCCGG GAGCTGACCC GGGGCTTTCG CGGCATAGAT
CACCGCGCGC AGGTCGAGAG GGCGACCGGG TTTCTCGACA GGCTTGATGC CGGGATCGAT
GCCGAGACGC TCGTCGAAGA CCTGCCGATC GGCCAGCAGC AGCTGGTGGA GATCGCAAAG
GCGATCTCGC TCGACACGCG CATCCTTATT CTGGACGAGC CGACATCGGC CCTTTCGGCG
GCGGAGGTCG ACGTTCTTTT CAAGGTCATC AGGGAGTTGA AGGCTCAAGG GGTGGCGATC
GTCTACATTT CTCACCGGCT CGAAGAGCTG ATGCGGATCG GCGACTACAT CACGGTTCTG
AGGGACGGGC AGATCACTGG CCACGCGATG GTGAAGGACA TCGATACCAA GTGGATCGTC
CGGTCGATGA TCGGCTCGGA CGCAAAGGAT TTCGCCAAAT CGATAGCGCA CCGCCTTGGC
GAGGAGGCCT TCCGCGCCGA GGATATCTGC CTGCCGCGCC GAACCGGCGG GCTCGCGGTC
GATCATGTCT CGATCTCGCT GCGCGCCGGC GAGGTGCTGG GCATCTACGG ATTGATGGGG
GCGGGTCGCA GCGAGTTCTT CGAATGCGTC ATGGGCCAGC ACCCGCATTC TTCGGGCCGG
GTTTTTGTCG ACGGGATTGA AATCGACGCC ACCGACACCG CCGGCCGGAT AAGCGCGGGT
TTGGCGCTGA TCCCGGAAGA TCGCCAGCGC GAGGGCCTGG TTCAGGCCCT ATCGATCGCC
AGCAATCTGA CGCTTGCGAG CCTGGATCGC TTCGTCCGCT TCGGCTTCCA TATCGTCGGC
GCACGGGAGC AGGCCTCGAT CGAGGCGGCC ATCCGCGATC TTTCCATCAA AGCGCCGAAC
CCGGACTTCG AGGTAACCTC GATGTCAGGC GGCAACCAGC AGAAGGTCGT TATCGGCAAG
GCGTTGATGA CGAAGCCGAA GGTGCTGCTG ATGGACGAAC CCAGCCGTGG CATCGATGTC
GGCGCCAAAG CGGATGTCTT CCGCACCATG CGGCGGCTTG CCGGCGAAGG GCTCGCAATC
CTCTTTTCCA CCTCGGACCT CGAAGAGGTC ATGGCGCTCT CCGACCGCAT CGCCGTCATG
AGCAACGGAC GGCTGGTCAC GGTCGTCGGC CGGGCCGATG CGACGGAAGA GATGATCGTG
AAGGCTTCGG CCGAAGGGCA TAAAACGACA AGGGAACACG CCTGA
|
|---|
| Protein sequence | MQARDDDDCI LRLEDVTKVY SGIVAVRHAD LSLRRGAVNV LVGENGAGKS TLMRIIAGVE
KPSLGRILLD GKEVEFHSPA DAQRHGIGMV FQELNLFGNL SVAENIFATR ELTRGFRGID
HRAQVERATG FLDRLDAGID AETLVEDLPI GQQQLVEIAK AISLDTRILI LDEPTSALSA
AEVDVLFKVI RELKAQGVAI VYISHRLEEL MRIGDYITVL RDGQITGHAM VKDIDTKWIV
RSMIGSDAKD FAKSIAHRLG EEAFRAEDIC LPRRTGGLAV DHVSISLRAG EVLGIYGLMG
AGRSEFFECV MGQHPHSSGR VFVDGIEIDA TDTAGRISAG LALIPEDRQR EGLVQALSIA
SNLTLASLDR FVRFGFHIVG AREQASIEAA IRDLSIKAPN PDFEVTSMSG GNQQKVVIGK
ALMTKPKVLL MDEPSRGIDV GAKADVFRTM RRLAGEGLAI LFSTSDLEEV MALSDRIAVM
SNGRLVTVVG RADATEEMIV KASAEGHKTT REHA
|
|---|
| |