| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3745 |
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| Symbol | |
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| ID | 5318735 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | + |
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| Start bp | 188444 |
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| End bp | 189721 |
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| Gene Length | 1278 bp |
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| Protein Length | 425 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640775558 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001312491 |
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| Protein GI | 150375895 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit
[TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.283661 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGTTTTC TGGTCGTCCT GGCCTTTCTC GGTCTCTTCA TGATCGGCTT CCCGGTGGTT
TACGCCATCC TGCTGCCGTC CATTCTCTAT GTTCTTGTCG AGGGATTGCC CTTCGGGCTG
CTTGCCCAGC GGATCACCTA TGCACTGGAC TCGTTTCCGC TGGTTGCCGT GCCGCTCTTC
ATCTTTGTCG GAAACCTCAT GAATCTTTCC GGCATCACCG ATCGCATCTT CCGCTTCGCC
TATACGCTGG TCGGGCGGGT GCCGGGCGGC CTCGCCCAGG TCAATGTCTT CGGAAGCCTG
ATCTTTTCCG GGATGTCGGG GGCGGCTCTG GCCGACATCG GCGGATTGGG GCGGATCGAA
ATCGATGCCA TGAAGAAGCG CGGGTTCGAT CCATCCTTCG CCGGTGCGGT AACTGCTGCC
TCGGCAACAC TCGGGCCGAT CTTCCCGCCC TCCATCCCGC TGATTGTGTA CGGATCGGTC
ACAAGCGTGT CGATCGTTCA GCTTCTCGTT GCCGGCATAA TGCCAGCCGT TCTCTGCACG
GCCCTGTTGA TGCTGACCGT GCTGATCGTC GCCATTCGCC ACGGCCATGC GCGCGCAGAA
CGTTGGCCCA CGGCTGGCGA GCTGGTCGCT TCGCTGGTGC CGGCGCTGCC AGCCATTCTC
GCTCCGGTCC TCATGGTCGG CGGAATGACG GCAGGCGCCT TCACGCCGAC GGAGGCGGCC
GCCATTACGG CCGTCTACGT GATCTTCATC AGCGCCGCTC TCTATCGCGA GCTGACGCCG
GCGCATCTAT GGCATTCGGC GGTGCTGACC GCGCGCAGTT CAAGCGCGAT CCTCATCATC
GTCGCCTCCG CCGCGCTTTT CGGCTGGATT CTGGCGGTCG AGCAAGTGCC GCAGACCTTT
GCTGCCACGC TTCTTGGCTG GTCGAAGGAT CCGCTGATGC TGCTGATCAT CGCAAATCTG
ATCTTCTTCA TCGCCGGCAT GTTCCTCGAC TCGACGACCG CAACGCTGCT CCTCGTTCCG
ATCATCGCCC CGCCGCTCGT CATGGCCGGA GTCGATCCTG TTCAACTCGG CATTGTGACG
ATCTTCAACC TGATGCTCGG CCTGCTGACG CCGCCGATGG GTCTGTCGCT GTTTCTCGTG
TCGGATATCG CCCAGGTTTC GATCCGACAG CTGCTGCGGG CGCTTGTGCC TTTCTACATT
CCTCTGGTGT CCACACTCGT CATCCTTACC TTGGCAAAAG ACCTGACGCT GTGGCTGCCC
CGTCTGATCG CCCAATAA
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| Protein sequence | MGFLVVLAFL GLFMIGFPVV YAILLPSILY VLVEGLPFGL LAQRITYALD SFPLVAVPLF
IFVGNLMNLS GITDRIFRFA YTLVGRVPGG LAQVNVFGSL IFSGMSGAAL ADIGGLGRIE
IDAMKKRGFD PSFAGAVTAA SATLGPIFPP SIPLIVYGSV TSVSIVQLLV AGIMPAVLCT
ALLMLTVLIV AIRHGHARAE RWPTAGELVA SLVPALPAIL APVLMVGGMT AGAFTPTEAA
AITAVYVIFI SAALYRELTP AHLWHSAVLT ARSSSAILII VASAALFGWI LAVEQVPQTF
AATLLGWSKD PLMLLIIANL IFFIAGMFLD STTATLLLVP IIAPPLVMAG VDPVQLGIVT
IFNLMLGLLT PPMGLSLFLV SDIAQVSIRQ LLRALVPFYI PLVSTLVILT LAKDLTLWLP
RLIAQ
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