| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3743 |
|---|
| Symbol | |
|---|
| ID | 5318733 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | + |
|---|
| Start bp | 186893 |
|---|
| End bp | 187885 |
|---|
| Gene Length | 993 bp |
|---|
| Protein Length | 330 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640775556 |
|---|
| Product | TRAP dicarboxylate transporter, DctP subunit |
|---|
| Protein accession | YP_001312489 |
|---|
| Protein GI | 150375893 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.397744 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGAACT TTCTGAAACA TGGCCGGATA ACCGGCGCCA TGCTGGGGGC CGCTTTATTG
ACAGGCGCCG CCTCGGCAAC CGAATTGCGC TATGCGCATG TGGGCGCCGA GGGAGACATC
CAGACGGTTT ACGCCGCACA GGCGGCGGAG GGAATTGCGG CGGCGACCGG CGGCGAAGTC
ACCGTCACCG TCTATCCCGC CAGCCAGCTC GGCGGGGTCG CGGAAATGGT GGATGGCGTG
CGCATGGGCT CGATCTCCAT GGGCCATCAT GATTTTGCTT CCCTCGCCCG ACTGGTCCCG
GAGGTCGCCG TCTTCAACGC GCCTTTCATC TATCGCGACG GCGCACATGC GCTCGCTGCA
ACGGACCCGC AGACATCGCC GGCACTCCAG GCGATCAACG AGAAGCTGGT CGCACAGGGC
GTGCGGATCA TCGGGCGCAT CTATCGCGGC GATCGCCACA TTTCCTCAAA TTTTCCGGTG
AAGACTCCCG CGGACCTTGC CGGAAAGCCC TTCCGTGCCG TCCCGCTCGA ATTGTGGGTT
TCCATGGTCA AGGGCTTCGG CGCAATTCCT ACCCCGGTCG AGGTTGCCGA ACTCCCGACC
GCGCTGATGA CGGGCGTGGT GGTCGGTCAG GAAAACCCGC TGACCATGAT CGCCTCCAAC
AATCTCAACG AGGTGCAATC GCATCTGTCA ATGACCGGCC ACATGCGCGC CGTGCTCGCC
GTCTTCATCA ATGAGGACGT CTGGCAGGGA TTGAGTGAAG AGCAGCGCTC GGCCCTCACC
AAGGTCCTCG ACGAGGAGGC CCGGAAATCG CTGAAGATGG CAACGGAATC AGAGGCCGAT
CTGGTGAAGG AACTCAAGGG CCGCGGCATG ACCGTCATAA CGGAGGCCGA AGGGCTCGAC
GTGGCGGCGT TCCGTGAGAA GGTCAGCGCC CAGATCAGAC AGGACTTCCC CGATTTCGCG
CCGCTCATCG AGCAGATCGA GGCGGTGAAG TAA
|
|---|
| Protein sequence | MLNFLKHGRI TGAMLGAALL TGAASATELR YAHVGAEGDI QTVYAAQAAE GIAAATGGEV
TVTVYPASQL GGVAEMVDGV RMGSISMGHH DFASLARLVP EVAVFNAPFI YRDGAHALAA
TDPQTSPALQ AINEKLVAQG VRIIGRIYRG DRHISSNFPV KTPADLAGKP FRAVPLELWV
SMVKGFGAIP TPVEVAELPT ALMTGVVVGQ ENPLTMIASN NLNEVQSHLS MTGHMRAVLA
VFINEDVWQG LSEEQRSALT KVLDEEARKS LKMATESEAD LVKELKGRGM TVITEAEGLD
VAAFREKVSA QIRQDFPDFA PLIEQIEAVK
|
|---|
| |