Gene Smed_3705 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3705 
Symbol 
ID5318425 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp146791 
End bp147864 
Gene Length1074 bp 
Protein Length357 aa 
Translation table11 
GC content65% 
IMG OID640775518 
Productalcohol dehydrogenase 
Protein accessionYP_001312451 
Protein GI150375855 
COG category[C] Energy production and conversion
[R] General function prediction only 
COG ID[COG0604] NADPH:quinone reductase and related Zn-dependent oxidoreductases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATAGGTT CCATTCCTGA CGCCATGGCG GCAGTGCGGC TGACCGGCCA TGGCGGATTG 
GACAAGCTCG TCTACAGCCG GGACGTTCCA GTCCCGGCTC CGGCCGCAGG CGAGGTGCTG
ATCAAAGTCA CCGCCTGCGG CATGAACAAT ACCGACGTAT GGGTGCGCGA AGGCGCCTAT
GGAACGGAAG ACGACCCGTC CGCCGTCTCG ACCTGGCGCC GCCAGGGCAA TACCCTGACC
TTCCCGCGCA TCCAGGGTAC GGACACGGTC GGGCACATCG TGGCGGTCGG CGAAGGTGTG
GACGAGGCAC GCATAGGCGA ACGCGTCATG GTCGATTTCT CGATCTACAA CCGCGACGAC
GACAGTCTTG CCGACATCGA CTATATGGGC CATGGCCGCG ATGGCGGCTA TGCCGAGTAT
ATGGCGCTTC CGGCAGAAAA CGCTCACGTG GTCGCAACCG ACCTGACCGA CATAGAGCTT
GCCACCTTCT GCTGTGCCTA TCTCACCGGC GAGCGCATGC TGGAACGGGC GCGGCTTGCC
GCCGGCGAGA CCGTGCTCGT GACCGGTGCC TCGGGAGGCG TCGGCTCGGC GATCATTCAG
CTTGCCCGCG CGCGCGGCGC CGTTCCGATC GCCGTTGCCG GACCGGGCAA GGAAGCAGCG
ATGCTCGAAA TCGGCGCCGA AGCCGTGGTG ACCCGAGGCC AGGGCAACCT CGCCGAGGCT
GTTGAGACGG CAGGCGGCGG CCGGCCGATC GATGTGGTCG CCGACCTTGT GGGCGGCCCC
CTCTTCAACG ACCTTCTGAA GATCCTGCGC CCGGAAGGCC GCTATACCAC CGCCGGGGCG
ATCGCCGGGC CGGTCGTGCA ACTCGATCTC AGGACGATGT ACCTGAAGCA ATTGGAGCTG
CACGGATCGA GCCAGGGCAG CCGGGCCGAT TTCCTCCGCC TCGTCCGCTA TATCGAGGAG
AAGAAGATCC GGCCGCTCGT CGGCGGCGTC TATCGCCTTT CGCAATTCCA TCGGGCGCAG
ACAGACTTCA TGGCGAAGAA CTTCGTCGGC AAGCTCGTGG TCGTGCCTGA TTGA
 
Protein sequence
MIGSIPDAMA AVRLTGHGGL DKLVYSRDVP VPAPAAGEVL IKVTACGMNN TDVWVREGAY 
GTEDDPSAVS TWRRQGNTLT FPRIQGTDTV GHIVAVGEGV DEARIGERVM VDFSIYNRDD
DSLADIDYMG HGRDGGYAEY MALPAENAHV VATDLTDIEL ATFCCAYLTG ERMLERARLA
AGETVLVTGA SGGVGSAIIQ LARARGAVPI AVAGPGKEAA MLEIGAEAVV TRGQGNLAEA
VETAGGGRPI DVVADLVGGP LFNDLLKILR PEGRYTTAGA IAGPVVQLDL RTMYLKQLEL
HGSSQGSRAD FLRLVRYIEE KKIRPLVGGV YRLSQFHRAQ TDFMAKNFVG KLVVVPD