| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3687 |
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| Symbol | |
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| ID | 5318805 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | - |
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| Start bp | 127828 |
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| End bp | 128415 |
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| Gene Length | 588 bp |
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| Protein Length | 195 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640775500 |
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| Product | tripartite ATP-independent periplasmic transporter DctQ |
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| Protein accession | YP_001312433 |
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| Protein GI | 150375837 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.22509 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCGGATG ATGCCATGTC TCAGGAAGTC CACCTGCAAA CGACGCCCGA AGAAATCGCC
CATGCTTTCG AGGAAGCCCC GCCCTCGGCG GACCTCTCCA ACTATTCCTT CGAGGATTGG
GTAACGCTCG CCGTTTTCTG GCTGATGACC GGATGCGTGT TCCTGCAGTT CTTCACGCGC
TACGTGCTCA ACGACTCCTA TGCCTGGACG GAGGAGATCG CCACGAACTG CCTGATCGGC
GTGGTGTTCC TGGGCTCCGC CATGTGCGTG CGCGTGTCGC GCCATATCCA GGTCGACGTG
CTCTATCATT ATCTGCCGGC AACCGTCGCC CGGGGCCTGG CGATCTTCGT CGATCTCGTG
CGCATCGTCT TCTTCGGCTA TGCCTGCTGG CTGATGTGGC GCTACGTGGC GATCGTCGCC
CATGAGCGTA TGATCACCGT CAACCTGCCG CGCAATATCG TTTTCTACGG CGTGCTGGCA
GGCTTCGTGC TGATGCTGAT CCGCTCGATC CAGGTCTTCG TCGCCAATCA ACGCCGCGGC
TATTCGGTTC TCGAAAAGCC CGAGGAATTC CACAAGGTCG AGGACTGA
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| Protein sequence | MPDDAMSQEV HLQTTPEEIA HAFEEAPPSA DLSNYSFEDW VTLAVFWLMT GCVFLQFFTR
YVLNDSYAWT EEIATNCLIG VVFLGSAMCV RVSRHIQVDV LYHYLPATVA RGLAIFVDLV
RIVFFGYACW LMWRYVAIVA HERMITVNLP RNIVFYGVLA GFVLMLIRSI QVFVANQRRG
YSVLEKPEEF HKVED
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