| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3683 |
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| Symbol | |
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| ID | 5318790 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | - |
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| Start bp | 122210 |
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| End bp | 123904 |
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| Gene Length | 1695 bp |
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| Protein Length | 564 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640775496 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001312429 |
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| Protein GI | 150375833 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.280959 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGGACG GCGATACGAC ACTGCCTGGT TCACCTTCCG TCGATTCTGG ATTTTTCGCC
GATTTTGACG AAGTCGTCTC GCTTTACGAC GAAAATTTTC AACTCATCGA ATGCACGCCA
AGGCACAGAG AAGCATATGT CGTCGAGTCC CTCATAGAGA CGTCCCTTTG GCACATTTAT
CCTGAACTAC TGGCGCCGGG TGCGAAGTCC GCTGTCGAGT TCGTGGTCGC GACCGGATTG
CCGAGAACCG TCGAGATCGC ACATGCATCG GCCGGGCCCC GGCGCACGCT CCTCATTTTC
CGCAGTAGGA GCGGCGTCGG AGTCGTCGAA GCTGAAAGCA GTGCCATGTA TCGCGAGACG
TTCAGGCAGA GCGAGAGCGA TCGTGCGCTA CTCCTGCATC AGGCGACCCA TGACGTTCTG
ACCGGATTGC CCAACCGGCG TCAGTTCAGC GATCAGCTGC GCGGCGCGTT GCCAGTACCG
AACGGTGCGC AAGTGGCGCT CATGCAGATC GATCTCGATG ACTTCAAGCC GATCAACGAT
ACATTGGGCC ACGGGGCAGG CGATGCAGTT CTCAAAATGG CGGCGGATCG GATCAGGAGC
ATTCTGAGGG ATAGGGAGTT CGCGTACCGT TTGGCCGGGG ACGAGTTCGC TGTCATTCAA
TGGAGGTCCG ATCAGCCCAG CGAGGCCGAG CGCCTTGCAG ACGCATTGAT CAACGCGTTC
AAAGAACCTT TTATGGTAGA GGGCATCAAC GTTTTTGTTG GGGCAAGCGT CGGAATTGCA
GTCGCTCCGG AAGACGGCAA CGAAGTCGAG CAGCTTATGA AAGCTGCCGA TATCGCGCTT
TATGCAGCAA AGAAGGACGG TCGGGGCCGC TCAAGCACGT TTACCCGCTC CATGCTCGTC
GTCCTCGAAC AGAGGGAAAT GCTGCGGCGC AGCCTGCGCA CCGCCCTCCA GGAGGGGCAG
TTCTTCCTCG AATACCAGCC ATTGGTGAAA CCATCGTCGT CGGTCGCCGG CTTCGAAGCA
CTCTTGCGTT GGCGTCACCC GCTGGTCGGC ACTATCCCGC CGAACGTCTT CATTCCAATG
GCGGAAGCCG ACGGCCTGAT GAGCGACATC GGCCGGTGGC TTCTCGAGCG GGCGTGCCGG
ACAGCGATGG ACTGGCCGTC CCACTTCACG CTCGCGGTCA ACTTATCGCC GGCGGAGTTC
CTTCACGAGG GGCTTACGGA TCGTGTGGCC CAGACGCTTG ACCTGGTCGG GATGCGAGCA
GATCGCCTCG AGCTGGAAAT TACCGAGTCG GTGCTGCTGG AACGTACGAT CAACAATCTC
GATACGCTTA ACACATTGAA CGTCCTGGGT GTGCAAATAT CGCTCGACGA TTTCGGTACC
TACTACTCGT CGCTGAGTTA TCTGAAGAAT TTTCCCTTCG ACACGATCAA GATCGATCAG
TATTTCATCA AGGATCTCGA GAGGAATGAG AAGGGCCAGA CGATCGTCCG CTCCATCATC
GCGCTCGCTC ATGGTCTCGG CATGAATGTC ACTGCCGAAG GGGTCGAGAC CGCGGGGCAG
GCAGCCTGGC TCCAGAAAGA AGGCTGCGAT CGGTTGCAGG GATATTTTCT AGGGGCGCCC
ATGGCTGCGG ACGCGATAGG CGACTTTCTC CGCAAAGCCT CTGCCACTCC TGCCACAGGC
CTTCAACGAA TATGA
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| Protein sequence | MPDGDTTLPG SPSVDSGFFA DFDEVVSLYD ENFQLIECTP RHREAYVVES LIETSLWHIY
PELLAPGAKS AVEFVVATGL PRTVEIAHAS AGPRRTLLIF RSRSGVGVVE AESSAMYRET
FRQSESDRAL LLHQATHDVL TGLPNRRQFS DQLRGALPVP NGAQVALMQI DLDDFKPIND
TLGHGAGDAV LKMAADRIRS ILRDREFAYR LAGDEFAVIQ WRSDQPSEAE RLADALINAF
KEPFMVEGIN VFVGASVGIA VAPEDGNEVE QLMKAADIAL YAAKKDGRGR SSTFTRSMLV
VLEQREMLRR SLRTALQEGQ FFLEYQPLVK PSSSVAGFEA LLRWRHPLVG TIPPNVFIPM
AEADGLMSDI GRWLLERACR TAMDWPSHFT LAVNLSPAEF LHEGLTDRVA QTLDLVGMRA
DRLELEITES VLLERTINNL DTLNTLNVLG VQISLDDFGT YYSSLSYLKN FPFDTIKIDQ
YFIKDLERNE KGQTIVRSII ALAHGLGMNV TAEGVETAGQ AAWLQKEGCD RLQGYFLGAP
MAADAIGDFL RKASATPATG LQRI
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