| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3680 |
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| Symbol | |
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| ID | 5318787 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | - |
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| Start bp | 118089 |
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| End bp | 120449 |
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| Gene Length | 2361 bp |
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| Protein Length | 786 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640775493 |
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| Product | stage II sporulation E family protein |
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| Protein accession | YP_001312426 |
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| Protein GI | 150375830 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0105855 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGTGA TGGGCGAAAA CACCGCTCGT TTGGGCTTGC GTTCGTTCCG CGCCAAGTTC
GTTCTGGTCG TCGGAGGCGC CGTGCTGTTC GATCTGCTCG TCACCGGCGG TCTTGCGCTC
TGGAATGTAC AAAGGCTCTC GCGCGATGCA GCAGCGGAAG TCGGGCGGGG CCTGGAGGAG
GCGAACCAGG ATTATATCCG CTCCTATGCG GAAACGACGG CCGCCCGCGT CAATCTTCTG
CTCAACCAGG TTCATTCGGA TGTAGGCACA CTGGCGGGGG TTCTCCAGGA GCAAATCGAC
CGGCCGGTGC GAAAATCGCA AATAGGGGAA GCAATGGCGC GTGGTGCGCC GGGAACCGTG
GCGGTTGCCT ACGACGAGAA AGGCGGGTGG GCTCAAAATC TGCCAGGTCC GCCGTCGGTC
GTCAGCGTCT GGGGGTATCT TCTCGATCAA AATCACTTTC CGCTTCCCGA TGTGCAGACC
GACATCGAGA ACAGCGCGGT CCTGGACCTC GTCGCGCCGA GCCTTCTGGC GAATGGCCAG
TCGAAGCTGC AGATGTACTA CATCGGCCCA AAGGAGCGGC CGATCTTCAG GACGGCACCC
TATACGGATC AGGCTCAGAC TTTCGACAAA CTGTATCCGG GACACAATGC GGCGGAGTTC
TGGTCTTTTT TCTTTCCGGG TCTTTACGAA TCCTGGGAGC AATGGGCGCG TGAGCCGGAG
TCACGTCCTG TGAATGACGA CATTACCCAG ACGGCGCCCT ATACCGACGC GATAACCGGC
AAGCTCATCG TCAGTTTCTT CCAGCCGCTA TGGTCGCGCG ACCGCAGCCG GGTGCTAGGC
GCTGCCGGCA CCGATATCAC GCTCGACCAA CTGGCCGAGA TCGTCGAGAA CGTCAAAGTG
GCGGAAACCG GTTTCGGTTT CCTGACGATG TCGGACGGCA ACGTTGTTGC CATTAATCCG
GTCGGAGAAA AGGTTATTGG CCTGCGGGCG TCGAACGCTG CCGCCAGCGG CGGCGTGACA
GGACTGGATC GCTCCTTGCG ACGGAGCATT CAGCCGGCGA TTGCGCAGTT GCCCCTGGAA
GAGGACGGAC TGCTCAAGCA CATACTGCTC GAGGAGAACG GCGAGAGGGT GCCGTACCTG
GTCGTCCTAA AACACTTGCA GCCAACCAAC CTCTGGGCGT CGGGCCCGGT CAGCCGCGAA
GCCATGTTGC TCGGAATCGC CGTGCCGGAG CGGGAAATCT ACGCTTCGCT TTTCGCCGCC
CAGGCCGGGA TCTCGAAGGC GACGAACAGA ATCCTGATCT ATCAGGTCCT CGCGCTTCTC
GTATCCCTCT TCTTCGTCAT CGCCGCCGTA TTCGCAATTT CCAAGCGCAT CACCGGCGGC
ATAAGCGCGC TCGCCAATGC CGCCAAGCGC ATTGAGGCCA AGGACTATTC AGTAAGGGTC
GACATTCCGA CGCGCGACGA GGTCGGCGAG GCCGGCGCAG CCTTCAATCG TATGGCCGAA
GAGATCAGCT TTCACACAGA GAACCTCGAG CAGCTGGTCG AGGACAGGAC GAAGGAGATC
GAAGAGGCGA ACCTCCAGAT CTCAGCTCTG AACCAGCAGT TGCGCAGCGA AAACTTGCGC
CTGGGCGCGG AACTCGCAGT CGCCCGACAT ATCCAGATGA TGGTTCTGCC TAAGGCCGGC
GAACTCGAAG AAATCGCCGA GCTCGAAATC GCCGCTTATA TGCGGCCCGC CGACGAGGTT
GGAGGCGACT ACTACGACGT TCTCAGGGAC GGAAACCGAT TGAAGATTGG AATTGGCGAT
GTGACCGGGC ACGGTCTCGA GAGCGGCGTG CTGATGCTGA TGGTTCAATC CGTGGCCCGT
GGCTTGCAGG AAGTGGGCGA GATGGAGCCG GCGCAATTCC TCAACCGCGT CAACCGGGCA
ATCTACAAGA ATCTGGTCAG GACCAGCACC AACAAGCACC TCTCCCTTGC ATTTCTCGAC
TATGACGGCG CAAGGCTGAT CCTTTCTGGC CAGCACGAGG AGTTGATCGT CATCAGAGAT
ATCGAAAAGG TGGAGCGGAT CGACACCCTC GATCTCGGAC TTCCCATCGG CTTGGAGCCT
GATATCTCTC CATTCGTCGC AACGCGCGAA ATCTCCTTCG GCAGCGGCGA TATGATCGTC
CTCCATACCG ATGGCGTGAC GGAGGCGGAG AGCGGAAGCG GTGAGCTCTT CGGCATCGAA
AGGCTCTGCG AAAGCGCGCG CTGTCGCTAT GGCAGCAGCG CTGAGGAGGT CAAGTCCGGC
ATTATAGAGG ATTTAATGAC ACATATAGGC ACCCAGAAAA TTCACGACGA TATCACTCTG
GTGGTGATGA GACACAGGTG A
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| Protein sequence | MSVMGENTAR LGLRSFRAKF VLVVGGAVLF DLLVTGGLAL WNVQRLSRDA AAEVGRGLEE
ANQDYIRSYA ETTAARVNLL LNQVHSDVGT LAGVLQEQID RPVRKSQIGE AMARGAPGTV
AVAYDEKGGW AQNLPGPPSV VSVWGYLLDQ NHFPLPDVQT DIENSAVLDL VAPSLLANGQ
SKLQMYYIGP KERPIFRTAP YTDQAQTFDK LYPGHNAAEF WSFFFPGLYE SWEQWAREPE
SRPVNDDITQ TAPYTDAITG KLIVSFFQPL WSRDRSRVLG AAGTDITLDQ LAEIVENVKV
AETGFGFLTM SDGNVVAINP VGEKVIGLRA SNAAASGGVT GLDRSLRRSI QPAIAQLPLE
EDGLLKHILL EENGERVPYL VVLKHLQPTN LWASGPVSRE AMLLGIAVPE REIYASLFAA
QAGISKATNR ILIYQVLALL VSLFFVIAAV FAISKRITGG ISALANAAKR IEAKDYSVRV
DIPTRDEVGE AGAAFNRMAE EISFHTENLE QLVEDRTKEI EEANLQISAL NQQLRSENLR
LGAELAVARH IQMMVLPKAG ELEEIAELEI AAYMRPADEV GGDYYDVLRD GNRLKIGIGD
VTGHGLESGV LMLMVQSVAR GLQEVGEMEP AQFLNRVNRA IYKNLVRTST NKHLSLAFLD
YDGARLILSG QHEELIVIRD IEKVERIDTL DLGLPIGLEP DISPFVATRE ISFGSGDMIV
LHTDGVTEAE SGSGELFGIE RLCESARCRY GSSAEEVKSG IIEDLMTHIG TQKIHDDITL
VVMRHR
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